Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27560 and AO356_27565 are separated by 219 nucleotides AO356_27565 and AO356_27570 are separated by 135 nucleotides AO356_27570 and AO356_27575 are separated by 56 nucleotides
AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695
_27560
AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378
_27565
AO356_27570: AO356_27570 - short-chain dehydrogenase, at 6,290,514 to 6,291,299
_27570
AO356_27575: AO356_27575 - Long-chain fatty acid transport protein, at 6,291,356 to 6,292,627
_27575
Position (kb)
6288
6289
6290
6291 Strain fitness (log2 ratio)
-1
0
1 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6288.011 kb on - strand, within AO356_27560 at 6288.570 kb on + strand, within AO356_27560 at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.707 kb on - strand at 6288.707 kb on - strand at 6288.806 kb on + strand at 6288.828 kb on - strand at 6289.306 kb on - strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.323 kb on - strand, within AO356_27565 at 6289.326 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.566 kb on + strand, within AO356_27565 at 6289.872 kb on + strand, within AO356_27565 at 6289.873 kb on - strand, within AO356_27565 at 6289.873 kb on - strand, within AO356_27565 at 6290.514 kb on - strand at 6290.589 kb on + strand at 6290.590 kb on - strand at 6290.760 kb on - strand, within AO356_27570 at 6290.760 kb on - strand, within AO356_27570 at 6290.859 kb on - strand, within AO356_27570 at 6290.952 kb on + strand, within AO356_27570 at 6290.997 kb on + strand, within AO356_27570 at 6290.997 kb on + strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6290.998 kb on - strand, within AO356_27570 at 6291.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 6,287,923 + AO356_27560 0.30 +0.4 6,287,923 + AO356_27560 0.30 -1.0 6,287,923 + AO356_27560 0.30 -0.4 6,287,923 + AO356_27560 0.30 -0.6 6,287,924 - AO356_27560 0.30 +0.0 6,287,924 - AO356_27560 0.30 -0.0 6,288,011 - AO356_27560 0.38 -0.1 6,288,570 + AO356_27560 0.89 +0.7 6,288,695 + +0.2 6,288,695 + +0.7 6,288,695 + -0.4 6,288,695 + -0.1 6,288,695 + -0.6 6,288,696 - -0.1 6,288,696 - -1.7 6,288,696 - +0.5 6,288,696 - +0.4 6,288,696 - +0.8 6,288,707 - +0.4 6,288,707 - +0.0 6,288,806 + +1.2 6,288,828 - +0.2 6,289,306 - AO356_27565 0.27 -0.5 6,289,322 + AO356_27565 0.28 +0.5 6,289,322 + AO356_27565 0.28 -0.2 6,289,323 - AO356_27565 0.28 -0.2 6,289,326 + AO356_27565 0.28 -1.1 6,289,473 + AO356_27565 0.38 -0.4 6,289,473 + AO356_27565 0.38 +0.6 6,289,474 - AO356_27565 0.38 +0.4 6,289,474 - AO356_27565 0.38 +0.3 6,289,474 - AO356_27565 0.38 -0.7 6,289,566 + AO356_27565 0.44 -1.5 6,289,872 + AO356_27565 0.65 +0.3 6,289,873 - AO356_27565 0.65 -0.2 6,289,873 - AO356_27565 0.65 +1.4 6,290,514 - -0.7 6,290,589 + +0.7 6,290,590 - -0.1 6,290,760 - AO356_27570 0.31 +0.2 6,290,760 - AO356_27570 0.31 +0.5 6,290,859 - AO356_27570 0.44 -0.9 6,290,952 + AO356_27570 0.56 +0.9 6,290,997 + AO356_27570 0.61 +1.0 6,290,997 + AO356_27570 0.61 -1.1 6,290,998 - AO356_27570 0.62 -1.0 6,290,998 - AO356_27570 0.62 +0.5 6,290,998 - AO356_27570 0.62 -0.1 6,290,998 - AO356_27570 0.62 +1.0 6,290,998 - AO356_27570 0.62 +0.7 6,291,358 - +0.9
Or see this region's nucleotide sequence