Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25120

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25110 and AO356_25115 overlap by 4 nucleotidesAO356_25115 and AO356_25120 are separated by 129 nucleotidesAO356_25120 and AO356_25125 are separated by 93 nucleotides AO356_25110: AO356_25110 - protein DnrP, at 5,685,491 to 5,685,691 _25110 AO356_25115: AO356_25115 - transcription factor, at 5,685,688 to 5,686,371 _25115 AO356_25120: AO356_25120 - hypothetical protein, at 5,686,501 to 5,686,830 _25120 AO356_25125: AO356_25125 - short-chain dehydrogenase, at 5,686,924 to 5,688,114 _25125 Position (kb) 5686 5687Strain fitness (log2 ratio) -1 0 1at 5685.666 kb on + strand, within AO356_25110at 5685.667 kb on - strand, within AO356_25110at 5686.025 kb on + strand, within AO356_25115at 5686.025 kb on + strand, within AO356_25115at 5686.026 kb on - strand, within AO356_25115at 5686.026 kb on - strand, within AO356_25115at 5686.026 kb on - strand, within AO356_25115at 5686.026 kb on - strand, within AO356_25115at 5686.026 kb on - strand, within AO356_25115at 5686.085 kb on + strand, within AO356_25115at 5686.085 kb on + strand, within AO356_25115at 5686.085 kb on + strand, within AO356_25115at 5686.211 kb on + strand, within AO356_25115at 5686.211 kb on + strand, within AO356_25115at 5686.212 kb on - strand, within AO356_25115at 5686.386 kb on + strandat 5686.387 kb on - strandat 5686.387 kb on - strandat 5686.387 kb on - strandat 5686.387 kb on - strandat 5686.394 kb on - strandat 5686.645 kb on + strand, within AO356_25120at 5686.659 kb on - strand, within AO356_25120at 5686.723 kb on + strand, within AO356_25120at 5686.923 kb on + strandat 5686.923 kb on + strandat 5686.923 kb on + strandat 5686.924 kb on - strandat 5686.924 kb on - strandat 5686.924 kb on - strandat 5686.924 kb on - strandat 5686.924 kb on - strandat 5686.924 kb on - strandat 5686.924 kb on - strandat 5687.372 kb on + strand, within AO356_25125at 5687.614 kb on + strand, within AO356_25125at 5687.614 kb on + strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125at 5687.615 kb on - strand, within AO356_25125

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,685,666 + AO356_25110 0.87 +0.5
5,685,667 - AO356_25110 0.88 +0.8
5,686,025 + AO356_25115 0.49 -0.5
5,686,025 + AO356_25115 0.49 +0.3
5,686,026 - AO356_25115 0.49 -0.4
5,686,026 - AO356_25115 0.49 -0.1
5,686,026 - AO356_25115 0.49 +0.1
5,686,026 - AO356_25115 0.49 +0.1
5,686,026 - AO356_25115 0.49 +0.8
5,686,085 + AO356_25115 0.58 +0.2
5,686,085 + AO356_25115 0.58 -0.3
5,686,085 + AO356_25115 0.58 -0.0
5,686,211 + AO356_25115 0.76 -0.5
5,686,211 + AO356_25115 0.76 -0.7
5,686,212 - AO356_25115 0.77 -0.0
5,686,386 + +0.0
5,686,387 - +0.0
5,686,387 - +1.2
5,686,387 - -0.5
5,686,387 - +0.2
5,686,394 - +0.2
5,686,645 + AO356_25120 0.44 +0.2
5,686,659 - AO356_25120 0.48 +0.7
5,686,723 + AO356_25120 0.67 +1.0
5,686,923 + -0.6
5,686,923 + +0.5
5,686,923 + -0.9
5,686,924 - -0.0
5,686,924 - -0.7
5,686,924 - +1.2
5,686,924 - +0.3
5,686,924 - +0.3
5,686,924 - -0.3
5,686,924 - -0.8
5,687,372 + AO356_25125 0.38 +0.4
5,687,614 + AO356_25125 0.58 +0.5
5,687,614 + AO356_25125 0.58 -0.8
5,687,615 - AO356_25125 0.58 +0.2
5,687,615 - AO356_25125 0.58 -0.1
5,687,615 - AO356_25125 0.58 +1.7
5,687,615 - AO356_25125 0.58 -0.5
5,687,615 - AO356_25125 0.58 -0.8
5,687,615 - AO356_25125 0.58 +0.0
5,687,615 - AO356_25125 0.58 -0.6

Or see this region's nucleotide sequence