Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22160

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_22150 and AO356_22155 are separated by 234 nucleotidesAO356_22155 and AO356_22160 are separated by 122 nucleotidesAO356_22160 and AO356_22165 are separated by 57 nucleotidesAO356_22165 and AO356_22170 are separated by 79 nucleotides AO356_22150: AO356_22150 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 4,957,515 to 4,959,785 _22150 AO356_22155: AO356_22155 - translation initiation factor IF-1, at 4,960,020 to 4,960,238 _22155 AO356_22160: AO356_22160 - arginyl-tRNA-protein transferase, at 4,960,361 to 4,961,068 _22160 AO356_22165: AO356_22165 - leucyl/phenylalanyl-tRNA--protein transferase, at 4,961,126 to 4,961,806 _22165 AO356_22170: AO356_22170 - thioredoxin reductase, at 4,961,886 to 4,962,845 _22170 Position (kb) 4960 4961 4962Strain fitness (log2 ratio) -1 0 1 2at 4959.609 kb on + strandat 4959.835 kb on + strandat 4960.363 kb on - strandat 4960.423 kb on - strandat 4960.423 kb on - strandat 4960.423 kb on - strandat 4960.423 kb on - strandat 4960.462 kb on - strand, within AO356_22160at 4960.551 kb on + strand, within AO356_22160at 4960.551 kb on + strand, within AO356_22160at 4960.552 kb on - strand, within AO356_22160at 4960.552 kb on - strand, within AO356_22160at 4960.552 kb on - strand, within AO356_22160at 4960.552 kb on - strand, within AO356_22160at 4960.552 kb on - strand, within AO356_22160at 4960.560 kb on + strand, within AO356_22160at 4960.560 kb on + strand, within AO356_22160at 4960.561 kb on - strand, within AO356_22160at 4960.561 kb on - strand, within AO356_22160at 4960.636 kb on - strand, within AO356_22160at 4960.636 kb on - strand, within AO356_22160at 4960.636 kb on - strand, within AO356_22160at 4960.636 kb on - strand, within AO356_22160at 4960.698 kb on + strand, within AO356_22160at 4960.698 kb on + strand, within AO356_22160at 4960.698 kb on + strand, within AO356_22160at 4960.731 kb on + strand, within AO356_22160at 4960.731 kb on + strand, within AO356_22160at 4960.731 kb on + strand, within AO356_22160at 4960.732 kb on - strand, within AO356_22160at 4960.740 kb on + strand, within AO356_22160at 4960.741 kb on - strand, within AO356_22160at 4960.752 kb on + strand, within AO356_22160at 4960.752 kb on + strand, within AO356_22160at 4960.753 kb on - strand, within AO356_22160at 4960.947 kb on + strand, within AO356_22160at 4960.947 kb on + strand, within AO356_22160at 4961.014 kb on - strandat 4961.014 kb on - strandat 4961.014 kb on - strandat 4961.014 kb on - strandat 4961.040 kb on + strandat 4961.040 kb on + strandat 4961.040 kb on + strandat 4961.040 kb on + strandat 4961.040 kb on + strandat 4961.041 kb on - strandat 4961.041 kb on - strandat 4961.041 kb on - strandat 4961.041 kb on - strandat 4961.041 kb on - strandat 4961.084 kb on + strandat 4961.085 kb on - strandat 4961.097 kb on + strandat 4961.097 kb on + strandat 4961.098 kb on - strandat 4961.103 kb on + strandat 4961.103 kb on + strandat 4961.103 kb on + strandat 4961.104 kb on - strandat 4961.104 kb on - strandat 4961.104 kb on - strandat 4961.104 kb on - strandat 4961.104 kb on - strandat 4961.104 kb on - strandat 4961.171 kb on + strandat 4961.171 kb on + strandat 4961.171 kb on + strandat 4961.172 kb on - strandat 4961.172 kb on - strandat 4961.445 kb on + strand, within AO356_22165at 4961.488 kb on - strand, within AO356_22165at 4961.550 kb on + strand, within AO356_22165at 4961.550 kb on + strand, within AO356_22165at 4961.589 kb on - strand, within AO356_22165at 4961.589 kb on - strand, within AO356_22165at 4961.712 kb on - strand, within AO356_22165at 4961.712 kb on - strand, within AO356_22165at 4961.732 kb on + strand, within AO356_22165at 4961.733 kb on - strand, within AO356_22165at 4961.792 kb on + strandat 4961.792 kb on + strandat 4961.792 kb on + strandat 4961.793 kb on - strandat 4961.793 kb on - strandat 4961.793 kb on - strandat 4961.821 kb on + strandat 4961.821 kb on + strandat 4961.821 kb on + strandat 4961.822 kb on - strandat 4961.822 kb on - strandat 4961.822 kb on - strandat 4961.911 kb on + strandat 4961.911 kb on + strandat 4961.911 kb on + strandat 4961.911 kb on + strandat 4961.912 kb on - strandat 4961.912 kb on - strandat 4961.912 kb on - strandat 4961.912 kb on - strandat 4961.957 kb on + strandat 4961.958 kb on - strandat 4961.971 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
4,959,609 + +0.5
4,959,835 + +0.1
4,960,363 - -0.0
4,960,423 - +0.4
4,960,423 - +1.1
4,960,423 - +0.2
4,960,423 - +0.1
4,960,462 - AO356_22160 0.14 -0.6
4,960,551 + AO356_22160 0.27 +1.8
4,960,551 + AO356_22160 0.27 +1.6
4,960,552 - AO356_22160 0.27 +0.9
4,960,552 - AO356_22160 0.27 +1.1
4,960,552 - AO356_22160 0.27 +0.3
4,960,552 - AO356_22160 0.27 -0.5
4,960,552 - AO356_22160 0.27 +1.6
4,960,560 + AO356_22160 0.28 +1.5
4,960,560 + AO356_22160 0.28 +1.4
4,960,561 - AO356_22160 0.28 +1.0
4,960,561 - AO356_22160 0.28 +1.4
4,960,636 - AO356_22160 0.39 +0.1
4,960,636 - AO356_22160 0.39 +0.7
4,960,636 - AO356_22160 0.39 +1.9
4,960,636 - AO356_22160 0.39 +0.7
4,960,698 + AO356_22160 0.48 +0.1
4,960,698 + AO356_22160 0.48 +1.7
4,960,698 + AO356_22160 0.48 +0.8
4,960,731 + AO356_22160 0.52 +1.4
4,960,731 + AO356_22160 0.52 +0.4
4,960,731 + AO356_22160 0.52 -0.1
4,960,732 - AO356_22160 0.52 +0.9
4,960,740 + AO356_22160 0.54 +1.2
4,960,741 - AO356_22160 0.54 +0.8
4,960,752 + AO356_22160 0.55 -0.4
4,960,752 + AO356_22160 0.55 -0.9
4,960,753 - AO356_22160 0.55 +0.9
4,960,947 + AO356_22160 0.83 -1.0
4,960,947 + AO356_22160 0.83 +0.9
4,961,014 - +0.8
4,961,014 - +1.1
4,961,014 - +1.6
4,961,014 - +1.3
4,961,040 + +1.2
4,961,040 + +0.5
4,961,040 + -0.4
4,961,040 + +0.0
4,961,040 + +0.2
4,961,041 - +0.6
4,961,041 - +0.8
4,961,041 - +1.0
4,961,041 - -0.2
4,961,041 - -1.6
4,961,084 + -0.5
4,961,085 - -0.2
4,961,097 + +1.5
4,961,097 + +0.3
4,961,098 - +0.3
4,961,103 + -0.3
4,961,103 + +0.3
4,961,103 + -0.7
4,961,104 - -0.8
4,961,104 - -1.2
4,961,104 - +0.2
4,961,104 - -0.4
4,961,104 - +0.1
4,961,104 - +0.8
4,961,171 + +0.5
4,961,171 + -0.2
4,961,171 + +0.3
4,961,172 - +0.4
4,961,172 - +0.9
4,961,445 + AO356_22165 0.47 -0.1
4,961,488 - AO356_22165 0.53 +0.5
4,961,550 + AO356_22165 0.62 +0.2
4,961,550 + AO356_22165 0.62 +0.3
4,961,589 - AO356_22165 0.68 +0.2
4,961,589 - AO356_22165 0.68 +0.3
4,961,712 - AO356_22165 0.86 +0.1
4,961,712 - AO356_22165 0.86 +0.1
4,961,732 + AO356_22165 0.89 -0.4
4,961,733 - AO356_22165 0.89 +0.5
4,961,792 + -0.7
4,961,792 + +0.8
4,961,792 + +0.1
4,961,793 - +0.3
4,961,793 - +0.5
4,961,793 - +0.1
4,961,821 + +0.4
4,961,821 + +0.6
4,961,821 + -0.0
4,961,822 - -0.8
4,961,822 - +0.7
4,961,822 - -0.1
4,961,911 + +0.1
4,961,911 + +0.7
4,961,911 + -0.7
4,961,911 + -0.8
4,961,912 - +1.2
4,961,912 - +0.8
4,961,912 - -0.2
4,961,912 - +0.5
4,961,957 + +0.5
4,961,958 - +0.2
4,961,971 + +0.4

Or see this region's nucleotide sequence