Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10070

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10065 and AO356_10070 are separated by 37 nucleotidesAO356_10070 and AO356_10075 are separated by 150 nucleotidesAO356_10075 and AO356_10080 overlap by 4 nucleotides AO356_10065: AO356_10065 - Fis family transcriptional regulator, at 2,271,681 to 2,273,072 _10065 AO356_10070: AO356_10070 - thioesterase, at 2,273,110 to 2,273,565 _10070 AO356_10075: AO356_10075 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 2,273,716 to 2,274,543 _10075 AO356_10080: AO356_10080 - ADP-ribose diphosphatase, at 2,274,540 to 2,275,106 _10080 Position (kb) 2273 2274Strain fitness (log2 ratio) -3 -2 -1 0 1at 2272.596 kb on + strand, within AO356_10065at 2272.596 kb on + strand, within AO356_10065at 2272.596 kb on + strand, within AO356_10065at 2272.596 kb on + strand, within AO356_10065at 2272.597 kb on - strand, within AO356_10065at 2272.597 kb on - strand, within AO356_10065at 2272.597 kb on - strand, within AO356_10065at 2272.597 kb on - strand, within AO356_10065at 2272.666 kb on + strand, within AO356_10065at 2272.666 kb on + strand, within AO356_10065at 2272.667 kb on - strand, within AO356_10065at 2272.667 kb on - strand, within AO356_10065at 2273.075 kb on + strandat 2273.075 kb on + strandat 2273.075 kb on + strandat 2273.275 kb on + strand, within AO356_10070at 2273.349 kb on + strand, within AO356_10070at 2273.350 kb on - strand, within AO356_10070at 2273.350 kb on - strand, within AO356_10070at 2273.350 kb on - strand, within AO356_10070at 2273.377 kb on + strand, within AO356_10070at 2273.378 kb on - strand, within AO356_10070at 2273.458 kb on + strand, within AO356_10070at 2273.458 kb on + strand, within AO356_10070at 2273.458 kb on + strand, within AO356_10070at 2273.458 kb on + strand, within AO356_10070at 2273.458 kb on + strand, within AO356_10070at 2273.459 kb on - strand, within AO356_10070at 2273.459 kb on - strand, within AO356_10070at 2273.468 kb on - strand, within AO356_10070at 2273.548 kb on + strandat 2273.548 kb on + strandat 2273.548 kb on + strandat 2273.548 kb on + strandat 2273.548 kb on + strandat 2273.548 kb on + strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.549 kb on - strandat 2273.591 kb on + strandat 2273.717 kb on + strandat 2273.784 kb on + strandat 2273.785 kb on - strandat 2273.785 kb on - strandat 2273.810 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.082 kb on + strand, within AO356_10075at 2274.083 kb on - strand, within AO356_10075at 2274.083 kb on - strand, within AO356_10075at 2274.083 kb on - strand, within AO356_10075at 2274.083 kb on - strand, within AO356_10075at 2274.083 kb on - strand, within AO356_10075at 2274.083 kb on - strand, within AO356_10075at 2274.099 kb on + strand, within AO356_10075at 2274.100 kb on - strand, within AO356_10075at 2274.158 kb on + strand, within AO356_10075at 2274.159 kb on - strand, within AO356_10075at 2274.225 kb on + strand, within AO356_10075

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,272,596 + AO356_10065 0.66 +1.2
2,272,596 + AO356_10065 0.66 -0.0
2,272,596 + AO356_10065 0.66 -0.8
2,272,596 + AO356_10065 0.66 -0.9
2,272,597 - AO356_10065 0.66 -1.4
2,272,597 - AO356_10065 0.66 +0.3
2,272,597 - AO356_10065 0.66 +0.5
2,272,597 - AO356_10065 0.66 +0.3
2,272,666 + AO356_10065 0.71 -0.0
2,272,666 + AO356_10065 0.71 -1.5
2,272,667 - AO356_10065 0.71 -0.4
2,272,667 - AO356_10065 0.71 +0.2
2,273,075 + -0.3
2,273,075 + +0.2
2,273,075 + +0.7
2,273,275 + AO356_10070 0.36 -0.0
2,273,349 + AO356_10070 0.52 +0.1
2,273,350 - AO356_10070 0.53 -0.9
2,273,350 - AO356_10070 0.53 -0.3
2,273,350 - AO356_10070 0.53 +0.1
2,273,377 + AO356_10070 0.59 -0.1
2,273,378 - AO356_10070 0.59 +0.3
2,273,458 + AO356_10070 0.76 -0.3
2,273,458 + AO356_10070 0.76 +0.4
2,273,458 + AO356_10070 0.76 +0.3
2,273,458 + AO356_10070 0.76 -0.0
2,273,458 + AO356_10070 0.76 -0.6
2,273,459 - AO356_10070 0.77 +0.1
2,273,459 - AO356_10070 0.77 +0.4
2,273,468 - AO356_10070 0.79 +1.1
2,273,548 + -0.7
2,273,548 + -1.1
2,273,548 + -0.3
2,273,548 + -0.0
2,273,548 + -0.0
2,273,548 + -0.1
2,273,549 - -0.7
2,273,549 - +1.2
2,273,549 - +0.6
2,273,549 - -0.3
2,273,549 - -0.7
2,273,549 - -1.1
2,273,549 - -0.6
2,273,549 - -0.5
2,273,549 - +0.5
2,273,549 - +0.7
2,273,549 - -0.8
2,273,549 - -0.0
2,273,549 - -0.0
2,273,591 + -0.9
2,273,717 + +0.2
2,273,784 + -0.3
2,273,785 - -1.4
2,273,785 - -2.1
2,273,810 + AO356_10075 0.11 +0.3
2,274,082 + AO356_10075 0.44 -1.0
2,274,082 + AO356_10075 0.44 +1.0
2,274,082 + AO356_10075 0.44 -1.0
2,274,082 + AO356_10075 0.44 -0.3
2,274,082 + AO356_10075 0.44 -0.8
2,274,082 + AO356_10075 0.44 -1.3
2,274,082 + AO356_10075 0.44 -0.3
2,274,082 + AO356_10075 0.44 -1.8
2,274,082 + AO356_10075 0.44 -1.2
2,274,083 - AO356_10075 0.44 -1.8
2,274,083 - AO356_10075 0.44 -0.8
2,274,083 - AO356_10075 0.44 -1.9
2,274,083 - AO356_10075 0.44 -2.4
2,274,083 - AO356_10075 0.44 -2.8
2,274,083 - AO356_10075 0.44 -0.4
2,274,099 + AO356_10075 0.46 -2.4
2,274,100 - AO356_10075 0.46 -2.4
2,274,158 + AO356_10075 0.53 -0.8
2,274,159 - AO356_10075 0.54 -0.7
2,274,225 + AO356_10075 0.61 -1.9

Or see this region's nucleotide sequence