Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04335

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04325 and AO356_04330 overlap by 4 nucleotidesAO356_04330 and AO356_04335 overlap by 4 nucleotidesAO356_04335 and AO356_04340 are separated by 64 nucleotides AO356_04325: AO356_04325 - allophanate hydrolase, at 985,215 to 986,135 _04325 AO356_04330: AO356_04330 - allophanate hydrolase, at 986,132 to 986,836 _04330 AO356_04335: AO356_04335 - hypothetical protein, at 986,833 to 987,585 _04335 AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936 _04340 Position (kb) 986 987 988Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 985.887 kb on + strand, within AO356_04325at 985.888 kb on - strand, within AO356_04325at 985.949 kb on + strand, within AO356_04325at 986.235 kb on + strand, within AO356_04330at 986.235 kb on + strand, within AO356_04330at 986.408 kb on + strand, within AO356_04330at 986.408 kb on + strand, within AO356_04330at 986.457 kb on + strand, within AO356_04330at 986.457 kb on + strand, within AO356_04330at 986.550 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.919 kb on + strand, within AO356_04335at 986.919 kb on + strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 987.108 kb on - strand, within AO356_04335at 987.179 kb on + strand, within AO356_04335at 987.180 kb on - strand, within AO356_04335at 987.239 kb on + strand, within AO356_04335at 987.239 kb on + strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.263 kb on + strand, within AO356_04335at 987.317 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.351 kb on - strand, within AO356_04335at 987.351 kb on - strand, within AO356_04335at 987.390 kb on - strand, within AO356_04335at 987.572 kb on - strandat 987.601 kb on - strandat 987.617 kb on + strandat 987.617 kb on + strandat 987.644 kb on + strandat 987.651 kb on + strandat 987.652 kb on - strandat 987.652 kb on - strandat 987.717 kb on + strandat 987.775 kb on + strandat 987.776 kb on - strandat 987.823 kb on - strand, within AO356_04340at 987.823 kb on - strand, within AO356_04340at 987.947 kb on - strand, within AO356_04340at 987.967 kb on + strand, within AO356_04340at 987.968 kb on - strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.970 kb on - strand, within AO356_04340at 987.970 kb on - strand, within AO356_04340at 987.970 kb on - strand, within AO356_04340at 988.003 kb on - strand, within AO356_04340at 988.003 kb on - strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.059 kb on + strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.112 kb on + strand, within AO356_04340at 988.112 kb on + strand, within AO356_04340at 988.112 kb on + strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.167 kb on + strand, within AO356_04340at 988.167 kb on + strand, within AO356_04340at 988.168 kb on - strand, within AO356_04340at 988.293 kb on + strand, within AO356_04340at 988.293 kb on + strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.413 kb on + strand, within AO356_04340at 988.414 kb on - strand, within AO356_04340at 988.581 kb on + strand, within AO356_04340at 988.582 kb on - strand, within AO356_04340at 988.582 kb on - strand, within AO356_04340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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985,887 + AO356_04325 0.73 +0.2
985,888 - AO356_04325 0.73 +1.0
985,949 + AO356_04325 0.80 +1.6
986,235 + AO356_04330 0.15 +0.7
986,235 + AO356_04330 0.15 +0.7
986,408 + AO356_04330 0.39 +0.7
986,408 + AO356_04330 0.39 +0.1
986,457 + AO356_04330 0.46 +0.7
986,457 + AO356_04330 0.46 -0.1
986,550 + AO356_04330 0.59 -1.3
986,664 + AO356_04330 0.75 +1.1
986,664 + AO356_04330 0.75 +0.3
986,685 + AO356_04330 0.78 -0.6
986,685 + AO356_04330 0.78 +0.5
986,685 + AO356_04330 0.78 +0.2
986,919 + AO356_04335 0.11 +0.9
986,919 + AO356_04335 0.11 +0.5
986,920 - AO356_04335 0.12 +0.6
986,920 - AO356_04335 0.12 -0.1
986,920 - AO356_04335 0.12 +0.2
986,920 - AO356_04335 0.12 +1.0
986,920 - AO356_04335 0.12 +0.7
987,108 - AO356_04335 0.37 +0.6
987,179 + AO356_04335 0.46 +1.1
987,180 - AO356_04335 0.46 +0.6
987,239 + AO356_04335 0.54 +1.8
987,239 + AO356_04335 0.54 +1.9
987,240 - AO356_04335 0.54 +1.0
987,240 - AO356_04335 0.54 +0.3
987,240 - AO356_04335 0.54 -0.7
987,263 + AO356_04335 0.57 +1.5
987,317 + AO356_04335 0.64 -0.1
987,350 + AO356_04335 0.69 +0.6
987,350 + AO356_04335 0.69 +0.3
987,350 + AO356_04335 0.69 +0.8
987,350 + AO356_04335 0.69 -0.1
987,351 - AO356_04335 0.69 -1.3
987,351 - AO356_04335 0.69 +2.3
987,390 - AO356_04335 0.74 +0.7
987,572 - -0.1
987,601 - +0.3
987,617 + -1.3
987,617 + -0.1
987,644 + -0.1
987,651 + +0.0
987,652 - -1.0
987,652 - +0.1
987,717 + +0.8
987,775 + +0.7
987,776 - +0.5
987,823 - AO356_04340 0.13 +0.3
987,823 - AO356_04340 0.13 +0.0
987,947 - AO356_04340 0.23 +1.2
987,967 + AO356_04340 0.25 -0.6
987,968 - AO356_04340 0.25 +0.5
987,969 + AO356_04340 0.25 -0.5
987,969 + AO356_04340 0.25 -0.3
987,969 + AO356_04340 0.25 +0.2
987,969 + AO356_04340 0.25 +1.0
987,969 + AO356_04340 0.25 -0.3
987,969 + AO356_04340 0.25 +0.5
987,970 - AO356_04340 0.25 -2.8
987,970 - AO356_04340 0.25 -1.4
987,970 - AO356_04340 0.25 +1.7
988,003 - AO356_04340 0.27 +0.6
988,003 - AO356_04340 0.27 +0.3
988,044 + AO356_04340 0.31 -0.6
988,044 + AO356_04340 0.31 -0.7
988,044 + AO356_04340 0.31 +0.7
988,044 + AO356_04340 0.31 +0.7
988,045 - AO356_04340 0.31 +0.2
988,045 - AO356_04340 0.31 -0.4
988,045 - AO356_04340 0.31 +0.8
988,045 - AO356_04340 0.31 +1.2
988,059 + AO356_04340 0.32 -0.8
988,060 - AO356_04340 0.32 +0.5
988,060 - AO356_04340 0.32 +0.4
988,060 - AO356_04340 0.32 -0.3
988,060 - AO356_04340 0.32 +0.3
988,060 - AO356_04340 0.32 +0.2
988,060 - AO356_04340 0.32 -0.2
988,060 - AO356_04340 0.32 +0.7
988,060 - AO356_04340 0.32 +0.6
988,060 - AO356_04340 0.32 +0.5
988,068 + AO356_04340 0.32 +0.3
988,068 + AO356_04340 0.32 +0.4
988,068 + AO356_04340 0.32 -0.2
988,068 + AO356_04340 0.32 -0.8
988,069 - AO356_04340 0.33 +0.1
988,069 - AO356_04340 0.33 +0.3
988,069 - AO356_04340 0.33 +0.0
988,069 - AO356_04340 0.33 -0.4
988,069 - AO356_04340 0.33 +0.2
988,069 - AO356_04340 0.33 -1.1
988,112 + AO356_04340 0.36 -0.2
988,112 + AO356_04340 0.36 -0.4
988,112 + AO356_04340 0.36 -0.9
988,113 - AO356_04340 0.36 -0.4
988,113 - AO356_04340 0.36 +1.2
988,113 - AO356_04340 0.36 -0.4
988,113 - AO356_04340 0.36 +0.6
988,113 - AO356_04340 0.36 +1.2
988,167 + AO356_04340 0.40 -0.1
988,167 + AO356_04340 0.40 +0.3
988,168 - AO356_04340 0.40 +0.2
988,293 + AO356_04340 0.50 -1.1
988,293 + AO356_04340 0.50 +1.4
988,294 - AO356_04340 0.50 -0.2
988,294 - AO356_04340 0.50 -0.7
988,294 - AO356_04340 0.50 -2.7
988,294 - AO356_04340 0.50 -1.3
988,294 - AO356_04340 0.50 +0.7
988,294 - AO356_04340 0.50 -0.3
988,294 - AO356_04340 0.50 +0.9
988,413 + AO356_04340 0.59 -0.6
988,414 - AO356_04340 0.59 -0.9
988,581 + AO356_04340 0.72 -0.4
988,582 - AO356_04340 0.72 +0.3
988,582 - AO356_04340 0.72 -1.8

Or see this region's nucleotide sequence