Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003360

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,783,017	-				-2.5
3,783,017	-				-1.1
3,783,017	-				+1.7
3,783,017	-				-0.1
3,783,017	-				+1.2
3,783,017	-				+0.5
3,783,017	-				-2.4
3,783,017	-				-1.0
3,783,017	-				+0.3
3,783,017	-				+1.2
3,783,017	-				+0.1
3,783,019	-				+1.3
3,783,019	-				-1.1
3,783,019	-				-0.6
3,783,019	-				-2.0
3,783,019	-				-0.6
3,783,019	-				+0.9
3,783,019	-				-1.8
3,783,019	-				-1.4
3,783,019	-				-0.8
3,783,019	-				+4.4
3,783,019	-				-0.4
3,783,019	-				+0.5
3,783,019	-				-1.4
3,783,044	-				+0.1
3,783,044	-				+0.2
3,783,044	-				-2.2
3,783,044	-				-0.8
3,783,044	-				-0.0
3,783,114	-				+0.9
3,783,114	-				+2.8
3,783,114	-				-0.5
3,783,216	+		ABIE53_003359	0.12	-0.4
3,783,216	+		ABIE53_003359	0.12	+0.8
3,783,216	+		ABIE53_003359	0.12	-1.8
3,783,217	-		ABIE53_003359	0.12	-2.5
3,783,287	+		ABIE53_003359	0.24	-0.8
3,783,287	+		ABIE53_003359	0.24	-0.9
3,783,287	+		ABIE53_003359	0.24	-2.1
3,783,287	+		ABIE53_003359	0.24	-2.6
3,783,287	+		ABIE53_003359	0.24	+0.6
3,783,288	-		ABIE53_003359	0.24	-0.0
3,783,288	-		ABIE53_003359	0.24	-0.5
3,783,288	-		ABIE53_003359	0.24	-1.3
3,783,288	-		ABIE53_003359	0.24	+2.4
3,783,288	-		ABIE53_003359	0.24	-1.6
3,783,288	-		ABIE53_003359	0.24	-0.4
3,783,288	-		ABIE53_003359	0.24	-1.2
3,783,288	-		ABIE53_003359	0.24	-2.0
3,783,338	+		ABIE53_003359	0.33	+1.4
3,783,508	+		ABIE53_003359	0.64	-0.4
3,783,509	-		ABIE53_003359	0.64	-1.0
3,783,509	-		ABIE53_003359	0.64	+1.2
3,783,554	+		ABIE53_003359	0.72	-2.0
3,783,554	+		ABIE53_003359	0.72	-0.4
3,783,554	+		ABIE53_003359	0.72	-0.4
3,783,554	+		ABIE53_003359	0.72	+1.0
3,783,554	+		ABIE53_003359	0.72	+0.8
3,783,554	+		ABIE53_003359	0.72	-1.6
3,783,554	+		ABIE53_003359	0.72	-2.1
3,783,554	+		ABIE53_003359	0.72	-2.0
3,783,555	-		ABIE53_003359	0.72	-1.1
3,783,555	-		ABIE53_003359	0.72	+0.2
3,783,555	-		ABIE53_003359	0.72	-0.6
3,783,555	-		ABIE53_003359	0.72	+0.1
3,783,555	-		ABIE53_003359	0.72	-0.4
3,783,555	-		ABIE53_003359	0.72	+0.6
3,783,560	+		ABIE53_003359	0.73	-1.0
3,783,560	+		ABIE53_003359	0.73	-1.0
3,783,560	+		ABIE53_003359	0.73	+1.4
3,783,561	-		ABIE53_003359	0.73	+0.2
3,783,561	-		ABIE53_003359	0.73	-2.6
3,783,561	-		ABIE53_003359	0.73	+3.2
3,783,561	-		ABIE53_003359	0.73	+1.5
3,783,653	+		ABIE53_003359	0.89	-1.4
3,783,653	+		ABIE53_003359	0.89	-1.1
3,783,653	+		ABIE53_003359	0.89	+0.2
3,783,653	+		ABIE53_003359	0.89	+0.2
3,783,653	+		ABIE53_003359	0.89	-0.5
3,783,653	+		ABIE53_003359	0.89	+1.2
3,783,653	+		ABIE53_003359	0.89	+0.7
3,783,653	+		ABIE53_003359	0.89	+1.8
3,783,653	+		ABIE53_003359	0.89	-0.4
3,783,653	+		ABIE53_003359	0.89	-0.4
3,783,654	-		ABIE53_003359	0.90	-1.6
3,783,654	-		ABIE53_003359	0.90	-1.0
3,783,654	-		ABIE53_003359	0.90	-0.8
3,783,654	-		ABIE53_003359	0.90	-2.8
3,783,654	-		ABIE53_003359	0.90	-0.9
3,783,654	-		ABIE53_003359	0.90	-0.9
3,783,676	+				+0.9
3,783,676	+				-0.8
3,783,677	-				-1.1
3,783,771	+				-2.4
3,783,771	+				+1.2
3,783,771	+				-0.3
3,783,772	-				+0.4
3,783,772	-				-2.8
3,783,772	-				+0.3
3,783,802	+				-1.2
3,783,802	+				+1.2
3,783,802	+				-0.8
3,783,802	+				+0.7
3,783,803	-				+0.4
3,783,803	-				+0.0
3,783,803	-				+0.5
3,783,803	-				+0.4
3,783,803	-				-0.6
3,784,154	+		ABIE53_003360	0.24	+2.0
3,784,155	+		ABIE53_003360	0.24	-0.3
3,784,155	+		ABIE53_003360	0.24	-2.0
3,784,155	+		ABIE53_003360	0.24	-1.8
3,784,155	+		ABIE53_003360	0.24	+0.6
3,784,155	+		ABIE53_003360	0.24	-1.3
3,784,155	+		ABIE53_003360	0.24	+0.3
3,784,155	+		ABIE53_003360	0.24	-0.4
3,784,155	+		ABIE53_003360	0.24	-0.0
3,784,155	+		ABIE53_003360	0.24	+1.1
3,784,155	+		ABIE53_003360	0.24	-2.0
3,784,155	+		ABIE53_003360	0.24	+0.1
3,784,155	+		ABIE53_003360	0.24	-0.4
3,784,155	+		ABIE53_003360	0.24	+0.1
3,784,155	+		ABIE53_003360	0.24	+0.1
3,784,155	+		ABIE53_003360	0.24	-0.9
3,784,156	-		ABIE53_003360	0.24	+0.2
3,784,156	-		ABIE53_003360	0.24	+0.6
3,784,156	-		ABIE53_003360	0.24	+0.2
3,784,156	-		ABIE53_003360	0.24	-0.4
3,784,156	-		ABIE53_003360	0.24	-1.4
3,784,156	-		ABIE53_003360	0.24	+1.7
3,784,156	-		ABIE53_003360	0.24	+0.2
3,784,156	-		ABIE53_003360	0.24	-0.7
3,784,156	-		ABIE53_003360	0.24	-1.6
3,784,156	-		ABIE53_003360	0.24	-1.0
3,784,156	-		ABIE53_003360	0.24	-0.9
3,784,156	-		ABIE53_003360	0.24	+0.1
3,784,156	-		ABIE53_003360	0.24	-1.6
3,784,156	-		ABIE53_003360	0.24	-1.9
3,784,157	+		ABIE53_003360	0.24	-0.4
3,784,157	+		ABIE53_003360	0.24	+1.5
3,784,157	+		ABIE53_003360	0.24	+1.7
3,784,157	+		ABIE53_003360	0.24	+0.4
3,784,157	+		ABIE53_003360	0.24	-0.0
3,784,157	+		ABIE53_003360	0.24	+1.3
3,784,157	+		ABIE53_003360	0.24	+1.6
3,784,157	+		ABIE53_003360	0.24	-0.8
3,784,157	+		ABIE53_003360	0.24	-0.8
3,784,158	-		ABIE53_003360	0.24	-1.8
3,784,158	-		ABIE53_003360	0.24	+0.2
3,784,158	-		ABIE53_003360	0.24	+2.8
3,784,158	-		ABIE53_003360	0.24	+0.7
3,784,158	-		ABIE53_003360	0.24	+0.2
3,784,158	-		ABIE53_003360	0.24	-1.0
3,784,158	-		ABIE53_003360	0.24	-2.0
3,784,158	-		ABIE53_003360	0.24	-0.8
3,784,158	-		ABIE53_003360	0.24	+3.2
3,784,158	-		ABIE53_003360	0.24	+0.3
3,784,158	-		ABIE53_003360	0.24	-0.2
3,784,158	-		ABIE53_003360	0.24	-0.2
3,784,158	-		ABIE53_003360	0.24	+1.4
3,784,158	-		ABIE53_003360	0.24	+0.3
3,784,251	+		ABIE53_003360	0.30	+1.6
3,784,251	+		ABIE53_003360	0.30	-1.4
3,784,251	+		ABIE53_003360	0.30	-0.4
3,784,251	+		ABIE53_003360	0.30	-0.6
3,784,251	+		ABIE53_003360	0.30	-0.4
3,784,251	+		ABIE53_003360	0.30	+0.1
3,784,252	-		ABIE53_003360	0.30	-0.3
3,784,252	-		ABIE53_003360	0.30	+0.4
3,784,252	-		ABIE53_003360	0.30	-0.8
3,784,252	-		ABIE53_003360	0.30	-0.7
3,784,252	-		ABIE53_003360	0.30	+2.2
3,784,252	-		ABIE53_003360	0.30	+1.5
3,784,291	+		ABIE53_003360	0.32	-0.8
3,784,329	+		ABIE53_003360	0.35	-1.8
3,784,330	-		ABIE53_003360	0.35	+0.5
3,784,330	-		ABIE53_003360	0.35	-0.2
3,784,330	-		ABIE53_003360	0.35	+1.0
3,784,330	-		ABIE53_003360	0.35	-1.0
3,784,330	-		ABIE53_003360	0.35	+0.0
3,784,330	-		ABIE53_003360	0.35	+2.2
3,784,391	+		ABIE53_003360	0.39	-1.1
3,784,443	+		ABIE53_003360	0.42	-2.9
3,784,443	+		ABIE53_003360	0.42	-0.4
3,784,443	+		ABIE53_003360	0.42	+0.2
3,784,444	-		ABIE53_003360	0.42	-0.8
3,784,444	-		ABIE53_003360	0.42	-0.4
3,784,470	+		ABIE53_003360	0.44	+2.5
3,784,470	+		ABIE53_003360	0.44	-0.4
3,784,470	+		ABIE53_003360	0.44	-0.4
3,784,470	+		ABIE53_003360	0.44	-0.1
3,784,470	+		ABIE53_003360	0.44	+0.7
3,784,470	+		ABIE53_003360	0.44	-0.8
3,784,470	+		ABIE53_003360	0.44	-0.7
3,784,471	-		ABIE53_003360	0.44	-2.0
3,784,471	-		ABIE53_003360	0.44	+0.9
3,784,471	-		ABIE53_003360	0.44	+2.2
3,784,677	+		ABIE53_003360	0.57	-0.3
3,784,677	+		ABIE53_003360	0.57	+0.9
3,784,678	-		ABIE53_003360	0.57	-1.6
3,784,748	+		ABIE53_003360	0.62	-0.5
3,784,748	+		ABIE53_003360	0.62	-0.7
3,784,748	+		ABIE53_003360	0.62	+0.2
3,784,748	+		ABIE53_003360	0.62	+0.2
3,784,749	-		ABIE53_003360	0.62	+2.6
3,784,749	-		ABIE53_003360	0.62	-0.3
3,784,749	-		ABIE53_003360	0.62	-0.4
3,784,749	-		ABIE53_003360	0.62	-1.6
3,784,906	+		ABIE53_003360	0.72	+2.5
3,784,906	+		ABIE53_003360	0.72	+0.6
3,784,906	+		ABIE53_003360	0.72	+1.2
3,784,906	+		ABIE53_003360	0.72	-0.8
3,784,906	+		ABIE53_003360	0.72	-2.7
3,784,906	+		ABIE53_003360	0.72	+1.2
3,784,907	-		ABIE53_003360	0.72	+0.0
3,784,907	-		ABIE53_003360	0.72	+1.2
3,784,907	-		ABIE53_003360	0.72	+0.6
3,784,907	-		ABIE53_003360	0.72	-2.1
3,784,907	-		ABIE53_003360	0.72	+0.5
3,784,927	+		ABIE53_003360	0.73	-1.1
3,784,927	+		ABIE53_003360	0.73	+0.5
3,784,927	+		ABIE53_003360	0.73	+0.7
3,784,927	+		ABIE53_003360	0.73	+1.2
3,784,927	+		ABIE53_003360	0.73	-1.4
3,784,927	+		ABIE53_003360	0.73	+1.8
3,784,927	+		ABIE53_003360	0.73	+0.0
3,784,928	-		ABIE53_003360	0.73	-1.4
3,784,928	-		ABIE53_003360	0.73	-0.9
3,784,928	-		ABIE53_003360	0.73	+0.6
3,784,928	-		ABIE53_003360	0.73	+0.4
3,784,928	-		ABIE53_003360	0.73	+0.5
3,784,928	-		ABIE53_003360	0.73	-0.1
3,784,938	+		ABIE53_003360	0.74	-1.8
3,784,938	+		ABIE53_003360	0.74	-0.7
3,784,939	-		ABIE53_003360	0.74	+1.1
3,784,941	+		ABIE53_003360	0.74	-0.0
3,784,942	-		ABIE53_003360	0.74	+0.4
3,785,036	+		ABIE53_003360	0.80	-0.4
3,785,036	+		ABIE53_003360	0.80	+0.7
3,785,037	-		ABIE53_003360	0.80	-0.4
3,785,037	-		ABIE53_003360	0.80	+1.2
3,785,213	+				-0.8
3,785,213	+				-0.1
3,785,259	+				+1.2
3,785,259	+				-2.8
3,785,260	-				+2.4
3,785,260	-				-2.2
3,785,260	-				+1.7
3,785,260	-				-1.1
3,785,464	+		ABIE53_003361	0.10	-2.4
3,785,464	+		ABIE53_003361	0.10	-1.6
3,785,465	-		ABIE53_003361	0.10	-0.8
3,785,680	+		ABIE53_003361	0.33	+1.0
3,785,681	-		ABIE53_003361	0.33	-1.4
3,785,681	-		ABIE53_003361	0.33	-4.1
3,785,684	+		ABIE53_003361	0.33	-2.8
3,785,684	+		ABIE53_003361	0.33	-1.8
3,785,691	-		ABIE53_003361	0.34	-1.6
3,785,794	+		ABIE53_003361	0.44	+0.7
3,785,795	-		ABIE53_003361	0.44	-2.2
3,785,831	+		ABIE53_003361	0.48	-0.8
3,785,831	+		ABIE53_003361	0.48	-0.1
3,785,831	+		ABIE53_003361	0.48	-2.0
3,785,832	-		ABIE53_003361	0.48	-0.4
3,785,832	-		ABIE53_003361	0.48	-2.1
3,785,832	-		ABIE53_003361	0.48	-0.6
3,786,011	+		ABIE53_003361	0.67	+0.2
3,786,011	+		ABIE53_003361	0.67	-2.8
3,786,011	+		ABIE53_003361	0.67	+0.2
3,786,011	+		ABIE53_003361	0.67	+1.2
3,786,012	-		ABIE53_003361	0.67	-2.4
3,786,012	-		ABIE53_003361	0.67	+0.2
3,786,015	-		ABIE53_003361	0.67	+1.2
3,786,015	-		ABIE53_003361	0.67	-0.8
3,786,080	+		ABIE53_003361	0.74	-1.2
3,786,080	+		ABIE53_003361	0.74	-2.0
3,786,081	-		ABIE53_003361	0.74	+1.8
3,786,211	+		ABIE53_003361	0.87	-2.0
3,786,324	+				-1.7