Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000308 and ABIE53_000309 are separated by 178 nucleotides ABIE53_000309 and ABIE53_000310 are separated by 217 nucleotides ABIE53_000310 and ABIE53_000311 are separated by 131 nucleotides
ABIE53_000308: ABIE53_000308 - NodT family efflux transporter outer membrane factor (OMF) lipoprotein, at 326,216 to 327,799
_000308
ABIE53_000309: ABIE53_000309 - hypothetical protein, at 327,978 to 328,403
_000309
ABIE53_000310: ABIE53_000310 - DNA-binding MarR family transcriptional regulator, at 328,621 to 329,166
_000310
ABIE53_000311: ABIE53_000311 - DHA2 family multidrug resistance protein, at 329,298 to 330,896
_000311
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 327.114 kb on + strand, within ABIE53_000308 at 327.114 kb on + strand, within ABIE53_000308 at 327.115 kb on - strand, within ABIE53_000308 at 327.115 kb on - strand, within ABIE53_000308 at 327.115 kb on - strand, within ABIE53_000308 at 327.148 kb on - strand, within ABIE53_000308 at 327.207 kb on + strand, within ABIE53_000308 at 327.207 kb on + strand, within ABIE53_000308 at 327.207 kb on + strand, within ABIE53_000308 at 327.207 kb on + strand, within ABIE53_000308 at 327.207 kb on + strand, within ABIE53_000308 at 327.207 kb on + strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.208 kb on - strand, within ABIE53_000308 at 327.335 kb on - strand, within ABIE53_000308 at 327.354 kb on + strand, within ABIE53_000308 at 327.354 kb on + strand, within ABIE53_000308 at 327.354 kb on + strand, within ABIE53_000308 at 327.354 kb on + strand, within ABIE53_000308 at 327.354 kb on + strand, within ABIE53_000308 at 327.354 kb on + strand, within ABIE53_000308 at 327.355 kb on - strand, within ABIE53_000308 at 327.355 kb on - strand, within ABIE53_000308 at 327.355 kb on - strand, within ABIE53_000308 at 327.355 kb on - strand, within ABIE53_000308 at 327.355 kb on - strand, within ABIE53_000308 at 327.355 kb on - strand, within ABIE53_000308 at 327.397 kb on + strand, within ABIE53_000308 at 327.398 kb on - strand, within ABIE53_000308 at 327.398 kb on - strand, within ABIE53_000308 at 327.398 kb on - strand, within ABIE53_000308 at 327.459 kb on + strand, within ABIE53_000308 at 327.459 kb on + strand, within ABIE53_000308 at 327.459 kb on + strand, within ABIE53_000308 at 327.460 kb on - strand, within ABIE53_000308 at 327.460 kb on - strand, within ABIE53_000308 at 327.460 kb on - strand, within ABIE53_000308 at 327.502 kb on - strand, within ABIE53_000308 at 327.579 kb on + strand, within ABIE53_000308 at 327.579 kb on + strand, within ABIE53_000308 at 327.579 kb on + strand, within ABIE53_000308 at 327.579 kb on + strand, within ABIE53_000308 at 327.579 kb on + strand, within ABIE53_000308 at 327.580 kb on - strand, within ABIE53_000308 at 327.580 kb on - strand, within ABIE53_000308 at 327.580 kb on - strand, within ABIE53_000308 at 327.580 kb on - strand, within ABIE53_000308 at 327.580 kb on - strand, within ABIE53_000308 at 327.580 kb on - strand, within ABIE53_000308 at 327.651 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.654 kb on + strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.655 kb on - strand at 327.687 kb on + strand at 327.687 kb on + strand at 327.687 kb on + strand at 327.688 kb on - strand at 327.688 kb on - strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.765 kb on + strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.766 kb on - strand at 327.852 kb on + strand at 327.852 kb on + strand at 327.853 kb on - strand at 327.853 kb on - strand at 327.870 kb on + strand at 327.871 kb on - strand at 327.871 kb on - strand at 327.871 kb on - strand at 327.871 kb on - strand at 327.875 kb on + strand at 327.875 kb on + strand at 327.875 kb on + strand at 327.875 kb on + strand at 327.875 kb on + strand at 327.876 kb on - strand at 327.876 kb on - strand at 327.876 kb on - strand at 327.876 kb on - strand at 327.876 kb on - strand at 327.908 kb on + strand at 327.908 kb on + strand at 327.908 kb on + strand at 327.934 kb on + strand at 327.934 kb on + strand at 327.934 kb on + strand at 327.935 kb on - strand at 327.953 kb on + strand at 327.955 kb on + strand at 327.956 kb on - strand at 327.965 kb on + strand at 328.127 kb on + strand, within ABIE53_000309 at 328.127 kb on + strand, within ABIE53_000309 at 328.127 kb on + strand, within ABIE53_000309 at 328.128 kb on - strand, within ABIE53_000309 at 328.128 kb on - strand, within ABIE53_000309 at 328.385 kb on + strand at 328.386 kb on - strand at 328.396 kb on + strand at 328.396 kb on + strand at 328.396 kb on + strand at 328.397 kb on - strand at 328.397 kb on - strand at 328.397 kb on - strand at 328.397 kb on - strand at 328.463 kb on + strand at 328.463 kb on + strand at 328.463 kb on + strand at 328.463 kb on + strand at 328.463 kb on + strand at 328.464 kb on - strand at 328.464 kb on - strand at 328.464 kb on - strand at 328.464 kb on - strand at 328.464 kb on - strand at 328.464 kb on - strand at 328.503 kb on - strand at 328.505 kb on - strand at 328.515 kb on - strand at 328.522 kb on + strand at 328.534 kb on + strand at 328.534 kb on + strand at 328.534 kb on + strand at 328.534 kb on + strand at 328.534 kb on + strand at 328.534 kb on + strand at 328.535 kb on - strand at 328.535 kb on - strand at 328.535 kb on - strand at 328.535 kb on - strand at 328.535 kb on - strand at 328.535 kb on - strand at 328.615 kb on - strand at 328.636 kb on + strand at 328.663 kb on - strand at 328.675 kb on + strand at 328.676 kb on - strand, within ABIE53_000310 at 328.676 kb on - strand, within ABIE53_000310 at 328.703 kb on + strand, within ABIE53_000310 at 328.703 kb on + strand, within ABIE53_000310 at 328.703 kb on + strand, within ABIE53_000310 at 328.703 kb on + strand, within ABIE53_000310 at 328.703 kb on + strand, within ABIE53_000310 at 328.704 kb on - strand, within ABIE53_000310 at 328.704 kb on - strand, within ABIE53_000310 at 328.704 kb on - strand, within ABIE53_000310 at 328.825 kb on + strand, within ABIE53_000310 at 328.825 kb on + strand, within ABIE53_000310 at 328.825 kb on + strand, within ABIE53_000310 at 328.825 kb on + strand, within ABIE53_000310 at 328.825 kb on + strand, within ABIE53_000310 at 328.825 kb on + strand, within ABIE53_000310 at 328.826 kb on - strand, within ABIE53_000310 at 328.826 kb on - strand, within ABIE53_000310 at 328.826 kb on - strand, within ABIE53_000310 at 328.826 kb on - strand, within ABIE53_000310 at 328.826 kb on - strand, within ABIE53_000310 at 328.893 kb on + strand, within ABIE53_000310 at 329.182 kb on + strand at 329.182 kb on + strand at 329.182 kb on + strand at 329.182 kb on + strand at 329.182 kb on + strand at 329.183 kb on - strand at 329.183 kb on - strand at 329.183 kb on - strand at 329.183 kb on - strand at 329.183 kb on - strand at 329.204 kb on + strand at 329.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 327,114 + ABIE53_000308 0.57 +0.3 327,114 + ABIE53_000308 0.57 -1.4 327,115 - ABIE53_000308 0.57 +0.7 327,115 - ABIE53_000308 0.57 -1.9 327,115 - ABIE53_000308 0.57 -0.0 327,148 - ABIE53_000308 0.59 -1.6 327,207 + ABIE53_000308 0.63 -0.2 327,207 + ABIE53_000308 0.63 +0.1 327,207 + ABIE53_000308 0.63 +0.4 327,207 + ABIE53_000308 0.63 +0.6 327,207 + ABIE53_000308 0.63 -0.1 327,207 + ABIE53_000308 0.63 +1.4 327,208 - ABIE53_000308 0.63 -0.9 327,208 - ABIE53_000308 0.63 +1.7 327,208 - ABIE53_000308 0.63 +1.4 327,208 - ABIE53_000308 0.63 -0.7 327,208 - ABIE53_000308 0.63 -1.8 327,208 - ABIE53_000308 0.63 -1.2 327,208 - ABIE53_000308 0.63 -0.9 327,208 - ABIE53_000308 0.63 +0.8 327,335 - ABIE53_000308 0.71 -0.5 327,354 + ABIE53_000308 0.72 -1.2 327,354 + ABIE53_000308 0.72 -1.2 327,354 + ABIE53_000308 0.72 -0.2 327,354 + ABIE53_000308 0.72 +0.3 327,354 + ABIE53_000308 0.72 -0.2 327,354 + ABIE53_000308 0.72 -0.2 327,355 - ABIE53_000308 0.72 -1.4 327,355 - ABIE53_000308 0.72 -0.4 327,355 - ABIE53_000308 0.72 +1.2 327,355 - ABIE53_000308 0.72 +0.3 327,355 - ABIE53_000308 0.72 -1.4 327,355 - ABIE53_000308 0.72 -3.7 327,397 + ABIE53_000308 0.75 +1.1 327,398 - ABIE53_000308 0.75 +2.0 327,398 - ABIE53_000308 0.75 -1.2 327,398 - ABIE53_000308 0.75 -0.1 327,459 + ABIE53_000308 0.78 +1.0 327,459 + ABIE53_000308 0.78 -1.6 327,459 + ABIE53_000308 0.78 -1.6 327,460 - ABIE53_000308 0.79 +0.1 327,460 - ABIE53_000308 0.79 -1.1 327,460 - ABIE53_000308 0.79 -0.2 327,502 - ABIE53_000308 0.81 +1.4 327,579 + ABIE53_000308 0.86 -2.1 327,579 + ABIE53_000308 0.86 +0.4 327,579 + ABIE53_000308 0.86 -1.2 327,579 + ABIE53_000308 0.86 -1.4 327,579 + ABIE53_000308 0.86 -1.1 327,580 - ABIE53_000308 0.86 -0.6 327,580 - ABIE53_000308 0.86 +0.7 327,580 - ABIE53_000308 0.86 -0.4 327,580 - ABIE53_000308 0.86 -0.2 327,580 - ABIE53_000308 0.86 +0.6 327,580 - ABIE53_000308 0.86 +2.6 327,651 + -2.5 327,654 + +0.8 327,654 + +0.7 327,654 + +0.1 327,654 + +0.4 327,654 + -1.1 327,654 + +0.9 327,654 + +0.5 327,654 + -0.1 327,654 + -2.6 327,654 + +1.4 327,654 + -0.6 327,654 + -2.2 327,654 + -0.6 327,655 - +1.2 327,655 - +0.3 327,655 - -0.1 327,655 - +2.4 327,655 - -1.2 327,655 - +0.4 327,655 - +1.0 327,655 - -1.4 327,655 - -0.2 327,655 - +0.5 327,655 - +2.1 327,655 - -0.2 327,655 - -1.8 327,655 - +1.4 327,655 - +0.2 327,655 - -1.1 327,687 + +2.4 327,687 + +1.5 327,687 + -0.3 327,688 - +0.3 327,688 - +0.9 327,765 + +0.1 327,765 + -1.1 327,765 + -0.3 327,765 + +0.2 327,765 + -0.3 327,765 + +1.7 327,765 + +0.4 327,765 + -0.1 327,765 + -1.2 327,765 + -1.4 327,765 + +3.0 327,765 + -0.2 327,765 + +4.2 327,765 + -0.9 327,765 + +0.5 327,765 + +0.1 327,766 - -2.1 327,766 - -2.1 327,766 - -0.1 327,766 - -0.5 327,766 - -0.7 327,766 - -0.6 327,766 - -0.2 327,766 - -0.8 327,766 - -0.3 327,766 - -0.9 327,766 - +0.8 327,852 + -0.2 327,852 + +0.2 327,853 - -1.9 327,853 - +0.9 327,870 + -0.1 327,871 - -0.6 327,871 - -0.5 327,871 - -0.6 327,871 - +0.7 327,875 + +0.5 327,875 + +0.6 327,875 + +1.2 327,875 + +1.4 327,875 + -0.2 327,876 - +0.0 327,876 - +1.8 327,876 - +1.4 327,876 - +0.4 327,876 - +0.2 327,908 + -0.2 327,908 + -0.5 327,908 + +1.2 327,934 + -0.1 327,934 + +0.2 327,934 + +0.1 327,935 - +1.7 327,953 + +0.4 327,955 + +0.1 327,956 - +1.1 327,965 + +1.1 328,127 + ABIE53_000309 0.35 +0.7 328,127 + ABIE53_000309 0.35 +1.0 328,127 + ABIE53_000309 0.35 -1.1 328,128 - ABIE53_000309 0.35 -0.9 328,128 - ABIE53_000309 0.35 +0.4 328,385 + +0.6 328,386 - -0.5 328,396 + +0.8 328,396 + +0.2 328,396 + +0.3 328,397 - +0.3 328,397 - -0.4 328,397 - -0.2 328,397 - +2.7 328,463 + -0.3 328,463 + -1.3 328,463 + +0.0 328,463 + -1.2 328,463 + -0.6 328,464 - -0.2 328,464 - +0.5 328,464 - -0.9 328,464 - +0.4 328,464 - +1.4 328,464 - +3.0 328,503 - +1.4 328,505 - +0.1 328,515 - -0.6 328,522 + +0.5 328,534 + -2.1 328,534 + +4.0 328,534 + +0.4 328,534 + +0.5 328,534 + -0.3 328,534 + -1.2 328,535 - -0.2 328,535 - +0.4 328,535 - -2.1 328,535 - -0.9 328,535 - -1.7 328,535 - -1.9 328,615 - -0.9 328,636 + -1.9 328,663 - +0.1 328,675 + -2.8 328,676 - ABIE53_000310 0.10 +2.0 328,676 - ABIE53_000310 0.10 +0.8 328,703 + ABIE53_000310 0.15 +0.1 328,703 + ABIE53_000310 0.15 -1.9 328,703 + ABIE53_000310 0.15 -0.7 328,703 + ABIE53_000310 0.15 -0.2 328,703 + ABIE53_000310 0.15 +0.4 328,704 - ABIE53_000310 0.15 -0.9 328,704 - ABIE53_000310 0.15 -0.0 328,704 - ABIE53_000310 0.15 -0.2 328,825 + ABIE53_000310 0.37 -1.3 328,825 + ABIE53_000310 0.37 +0.2 328,825 + ABIE53_000310 0.37 -0.6 328,825 + ABIE53_000310 0.37 -0.7 328,825 + ABIE53_000310 0.37 -1.8 328,825 + ABIE53_000310 0.37 -0.2 328,826 - ABIE53_000310 0.38 -1.4 328,826 - ABIE53_000310 0.38 -0.0 328,826 - ABIE53_000310 0.38 -1.4 328,826 - ABIE53_000310 0.38 -3.4 328,826 - ABIE53_000310 0.38 +1.8 328,893 + ABIE53_000310 0.50 -1.2 329,182 + -0.0 329,182 + +0.1 329,182 + +0.4 329,182 + -0.1 329,182 + -1.6 329,183 - -1.2 329,183 - -0.2 329,183 - -1.6 329,183 - +1.4 329,183 - -0.8 329,204 + +3.4 329,204 + -0.2
Or see this region's nucleotide sequence