Strain Fitness in Shewanella loihica PV-4 around Shew_3821

Experiment: MinMedia 20C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MinMedia 20C
4,547,709	-		Shew_3819	0.76	-0.1
4,547,867	-				+0.2
4,547,867	-				-0.6
4,547,867	-				-0.7
4,547,867	-				+0.2
4,547,873	+				-0.0
4,547,879	-				-0.1
4,547,879	-				+0.2
4,547,883	+				+0.1
4,547,883	+				-0.0
4,547,883	+				-0.4
4,547,883	+				-0.2
4,547,883	+				-0.3
4,547,891	-				-0.1
4,548,020	-				-0.1
4,548,030	-				-0.2
4,548,030	-				-0.4
4,548,171	+				-0.3
4,548,174	-				-0.1
4,548,176	+				+0.4
4,548,176	+				-0.3
4,548,176	+				+0.1
4,548,189	-				-0.2
4,548,199	+				+0.1
4,548,465	-		Shew_3820	0.65	-0.1
4,548,522	-		Shew_3820	0.78	-0.4
4,548,580	+				-0.4
4,548,621	-				-0.2
4,548,662	-				-0.2
4,548,664	+				-0.4
4,548,669	+				+0.1
4,548,669	+				-0.2
4,548,672	-				-0.1
4,548,677	-				+0.1
4,548,710	-				-1.4
4,548,811	+				+0.2
4,548,884	+				+0.6
4,548,980	+		Shew_3821	0.11	-0.2
4,548,980	+		Shew_3821	0.11	+0.1
4,548,980	+		Shew_3821	0.11	+0.0
4,548,980	+		Shew_3821	0.11	+0.2
4,548,980	+		Shew_3821	0.11	-0.0
4,548,980	+		Shew_3821	0.11	+0.3
4,548,980	+		Shew_3821	0.11	+0.0
4,548,980	+		Shew_3821	0.11	-0.1
4,548,980	+		Shew_3821	0.11	-0.5
4,548,980	+		Shew_3821	0.11	-0.2
4,548,980	+		Shew_3821	0.11	+0.0
4,548,980	+		Shew_3821	0.11	-0.2
4,548,980	+		Shew_3821	0.11	-0.3
4,548,985	+		Shew_3821	0.11	+0.0
4,548,988	-		Shew_3821	0.12	-0.0
4,548,988	-		Shew_3821	0.12	-0.2
4,548,988	-		Shew_3821	0.12	+0.5
4,548,988	-		Shew_3821	0.12	+0.5
4,548,988	-		Shew_3821	0.12	+0.1
4,548,988	-		Shew_3821	0.12	-1.6
4,548,995	-		Shew_3821	0.12	+0.0
4,548,995	-		Shew_3821	0.12	-0.1
4,548,997	+		Shew_3821	0.12	+0.0
4,549,005	-		Shew_3821	0.12	-3.1
4,549,006	-		Shew_3821	0.12	+0.0
4,549,021	+		Shew_3821	0.13	-0.1
4,549,085	+		Shew_3821	0.15	-0.0
4,549,113	-		Shew_3821	0.16	+0.0
4,549,113	-		Shew_3821	0.16	+0.1
4,549,113	-		Shew_3821	0.16	-0.1
4,549,113	-		Shew_3821	0.16	-0.1
4,549,141	+		Shew_3821	0.17	-0.0
4,549,145	+		Shew_3821	0.18	-0.4
4,549,149	-		Shew_3821	0.18	-0.0
4,549,197	-		Shew_3821	0.20	-0.2
4,549,270	+		Shew_3821	0.22	-0.1
4,549,284	+		Shew_3821	0.23	-0.1
4,549,284	+		Shew_3821	0.23	-0.6
4,549,284	+		Shew_3821	0.23	-0.1
4,549,284	+		Shew_3821	0.23	-0.2
4,549,284	+		Shew_3821	0.23	+0.0
4,549,284	+		Shew_3821	0.23	-0.0
4,549,284	+		Shew_3821	0.23	-0.3
4,549,284	+		Shew_3821	0.23	-0.1
4,549,284	+		Shew_3821	0.23	-0.0
4,549,284	+		Shew_3821	0.23	-0.1
4,549,284	+		Shew_3821	0.23	+0.1
4,549,284	+		Shew_3821	0.23	-0.2
4,549,285	+		Shew_3821	0.23	+0.1
4,549,292	-		Shew_3821	0.23	-0.1
4,549,292	-		Shew_3821	0.23	-0.1
4,549,293	+		Shew_3821	0.23	+0.0
4,549,293	+		Shew_3821	0.23	+0.0
4,549,293	+		Shew_3821	0.23	+0.0
4,549,293	+		Shew_3821	0.23	+0.1
4,549,293	+		Shew_3821	0.23	+0.2
4,549,293	+		Shew_3821	0.23	+0.1
4,549,293	+		Shew_3821	0.23	-0.2
4,549,301	-		Shew_3821	0.24	-0.2
4,549,301	-		Shew_3821	0.24	+0.2
4,549,301	-		Shew_3821	0.24	-0.5
4,549,301	-		Shew_3821	0.24	+0.0
4,549,363	+		Shew_3821	0.26	+0.6
4,549,452	+		Shew_3821	0.29	-0.5
4,549,491	+		Shew_3821	0.31	-0.1
4,549,498	+		Shew_3821	0.31	+0.0
4,549,498	+		Shew_3821	0.31	-0.3
4,549,499	-		Shew_3821	0.31	+0.0
4,549,499	-		Shew_3821	0.31	-0.0
4,549,504	-		Shew_3821	0.31	+0.0
4,549,506	-		Shew_3821	0.31	-0.1
4,549,506	-		Shew_3821	0.31	-0.0
4,549,543	-		Shew_3821	0.33	-0.0
4,549,587	-		Shew_3821	0.35	+0.3
4,549,592	-		Shew_3821	0.35	+0.6
4,549,595	+		Shew_3821	0.35	-0.1
4,549,598	+		Shew_3821	0.35	-0.1
4,549,635	+		Shew_3821	0.36	-0.2
4,549,635	+		Shew_3821	0.36	-0.1
4,549,643	-		Shew_3821	0.37	-0.2
4,549,840	-		Shew_3821	0.44	+0.0
4,549,840	-		Shew_3821	0.44	-0.8
4,549,850	-		Shew_3821	0.45	+0.7
4,549,873	-		Shew_3821	0.45	-0.2
4,549,873	-		Shew_3821	0.45	-0.4
4,549,878	+		Shew_3821	0.46	+0.3
4,549,888	+		Shew_3821	0.46	+0.3
4,549,889	+		Shew_3821	0.46	+0.1
4,549,946	+		Shew_3821	0.48	-0.1
4,549,958	+		Shew_3821	0.49	-4.5
4,549,966	-		Shew_3821	0.49	+0.3
4,550,029	+		Shew_3821	0.51	-0.1
4,550,029	+		Shew_3821	0.51	-0.2
4,550,036	-		Shew_3821	0.52	-0.1
4,550,077	+		Shew_3821	0.53	-3.2
4,550,077	+		Shew_3821	0.53	-0.8
4,550,077	+		Shew_3821	0.53	-0.1
4,550,077	+		Shew_3821	0.53	-0.1
4,550,077	+		Shew_3821	0.53	-0.1
4,550,077	+		Shew_3821	0.53	-0.5
4,550,077	+		Shew_3821	0.53	+0.0
4,550,077	+		Shew_3821	0.53	-0.1
4,550,077	+		Shew_3821	0.53	-0.2
4,550,083	-		Shew_3821	0.54	-0.2
4,550,083	-		Shew_3821	0.54	+0.8
4,550,085	-		Shew_3821	0.54	+0.3
4,550,085	-		Shew_3821	0.54	+0.1
4,550,085	-		Shew_3821	0.54	+0.6
4,550,085	-		Shew_3821	0.54	+0.2
4,550,085	-		Shew_3821	0.54	-0.1
4,550,085	-		Shew_3821	0.54	-0.1
4,550,085	-		Shew_3821	0.54	-0.1
4,550,085	-		Shew_3821	0.54	+0.1
4,550,085	-		Shew_3821	0.54	-0.1
4,550,086	+		Shew_3821	0.54	-0.1
4,550,086	+		Shew_3821	0.54	+0.0
4,550,086	+		Shew_3821	0.54	-0.3
4,550,086	+		Shew_3821	0.54	-0.1
4,550,086	+		Shew_3821	0.54	-0.2
4,550,094	-		Shew_3821	0.54	-0.0
4,550,094	-		Shew_3821	0.54	+0.1
4,550,094	-		Shew_3821	0.54	-0.0
4,550,094	-		Shew_3821	0.54	-0.0
4,550,094	-		Shew_3821	0.54	+0.0
4,550,094	-		Shew_3821	0.54	+0.0
4,550,094	-		Shew_3821	0.54	+0.1
4,550,094	-		Shew_3821	0.54	-0.2
4,550,129	+		Shew_3821	0.55	-0.2
4,550,129	+		Shew_3821	0.55	+0.1
4,550,129	+		Shew_3821	0.55	-0.1
4,550,137	-		Shew_3821	0.56	-0.1
4,550,201	-		Shew_3821	0.58	+0.0
4,550,235	+		Shew_3821	0.59	-0.2
4,550,259	-		Shew_3821	0.60	+0.1
4,550,348	+		Shew_3821	0.64	+0.3
4,550,367	-		Shew_3821	0.64	-0.0
4,550,377	-		Shew_3821	0.65	-0.3
4,550,418	-		Shew_3821	0.66	-0.5
4,550,475	+		Shew_3821	0.69	+1.0
4,550,493	-		Shew_3821	0.69	+0.3
4,550,510	+		Shew_3821	0.70	-0.1
4,550,575	-		Shew_3821	0.72	+0.1
4,550,615	+		Shew_3821	0.74	+0.1
4,550,636	+		Shew_3821	0.75	+1.0
4,550,666	+		Shew_3821	0.76	+0.1
4,550,693	+		Shew_3821	0.77	-0.2
4,550,703	+		Shew_3821	0.77	-0.2
4,550,712	-		Shew_3821	0.78	-0.0
4,550,752	-		Shew_3821	0.79	+0.1
4,550,754	+		Shew_3821	0.79	-2.4
4,550,755	+		Shew_3821	0.79	+0.0
4,550,762	-		Shew_3821	0.79	+0.2
4,550,818	-		Shew_3821	0.82	+0.2
4,550,829	+		Shew_3821	0.82	-0.2
4,550,829	+		Shew_3821	0.82	+0.0
4,550,829	-		Shew_3821	0.82	+0.3
4,550,829	+		Shew_3821	0.82	+0.2
4,550,829	+		Shew_3821	0.82	+0.6
4,550,829	-		Shew_3821	0.82	-0.0
4,550,830	-		Shew_3821	0.82	+0.1
4,550,837	-		Shew_3821	0.82	+0.6
4,550,837	-		Shew_3821	0.82	-0.1
4,550,837	-		Shew_3821	0.82	+0.4
4,550,841	+		Shew_3821	0.83	-1.7
4,550,849	-		Shew_3821	0.83	-0.0
4,550,859	-		Shew_3821	0.83	-0.1
4,550,889	+		Shew_3821	0.84	-0.0
4,550,996	+		Shew_3821	0.88	-0.4
4,551,015	+		Shew_3821	0.89	-0.7
4,551,015	+		Shew_3821	0.89	+0.1
4,551,015	+		Shew_3821	0.89	+0.0
4,551,015	+		Shew_3821	0.89	-0.2
4,551,015	+		Shew_3821	0.89	+0.8
4,551,023	-		Shew_3821	0.89	-0.2
4,551,023	-		Shew_3821	0.89	+0.0
4,551,023	-		Shew_3821	0.89	-0.2
4,551,023	-		Shew_3821	0.89	-0.0
4,551,023	-		Shew_3821	0.89	-0.3
4,551,023	-		Shew_3821	0.89	-0.2
4,551,023	-		Shew_3821	0.89	-0.4
4,551,023	-		Shew_3821	0.89	+0.6
4,551,023	-		Shew_3821	0.89	+0.1
4,551,023	-		Shew_3821	0.89	-0.1
4,551,023	-		Shew_3821	0.89	+0.0
4,551,023	-		Shew_3821	0.89	-0.3
4,551,024	-		Shew_3821	0.90	-0.1
4,551,071	+				-0.2
4,551,079	+				-0.5
4,551,079	-				-0.1
4,551,093	-				-0.0
4,551,101	+				+0.7
4,551,189	+				-0.1
4,551,189	-				-0.2
4,551,191	+				+0.1
4,551,194	+				+0.0
4,551,195	+				+0.5
4,551,195	+				-0.0
4,551,195	+				-0.1
4,551,195	+				-0.3
4,551,199	+				+0.1
4,551,200	+				-0.3
4,551,200	+				-0.1
4,551,202	-				+0.0
4,551,202	-				-0.2
4,551,203	-				+0.0
4,551,203	+				-0.2
4,551,203	-				+1.1
4,551,203	-				-0.0
4,551,203	-				+0.2
4,551,203	-				+0.0
4,551,205	+				+0.5
4,551,208	-				-0.2
4,551,210	+				-0.3
4,551,213	-				+0.1
4,551,219	+				-0.1
4,551,224	+				-0.8
4,551,232	-				-0.1
4,551,232	-				-0.1
4,551,232	-				-0.2
4,551,243	-				+0.0
4,551,272	+				-0.8
4,551,299	-				-0.5
4,551,299	+				+0.0
4,551,345	+				+0.2
4,551,353	-				-0.8
4,551,354	+				-0.6
4,551,368	+				-1.4
4,551,371	+				-1.3
4,551,420	+		Shew_3822	0.11	-0.4
4,551,444	+		Shew_3822	0.13	-0.7
4,551,451	+		Shew_3822	0.14	-1.0
4,551,478	+		Shew_3822	0.17	-1.2
4,551,479	+		Shew_3822	0.17	-1.5
4,551,492	+		Shew_3822	0.18	-3.5
4,551,492	+		Shew_3822	0.18	-1.4
4,551,542	+		Shew_3822	0.23	-1.4
4,551,542	+		Shew_3822	0.23	-1.9
4,551,542	+		Shew_3822	0.23	-1.5
4,551,542	+		Shew_3822	0.23	-0.3
4,551,542	+		Shew_3822	0.23	-1.1
4,551,542	+		Shew_3822	0.23	-1.1
4,551,542	+		Shew_3822	0.23	-1.6
4,551,542	+		Shew_3822	0.23	-1.3
4,551,552	+		Shew_3822	0.24	-1.4
4,551,552	+		Shew_3822	0.24	-3.2
4,551,552	+		Shew_3822	0.24	-1.4
4,551,552	+		Shew_3822	0.24	-1.3
4,551,552	+		Shew_3822	0.24	+0.6
4,551,552	+		Shew_3822	0.24	-1.3
4,551,557	+		Shew_3822	0.25	-2.1
4,551,557	+		Shew_3822	0.25	-1.8
4,551,557	+		Shew_3822	0.25	-1.8
4,551,557	+		Shew_3822	0.25	-1.4
4,551,614	+		Shew_3822	0.31	+0.1
4,551,740	+		Shew_3822	0.44	-1.5
4,551,872	+		Shew_3822	0.57	-3.4
4,551,884	+		Shew_3822	0.59	-2.5
4,551,884	+		Shew_3822	0.59	-2.3
4,551,884	+		Shew_3822	0.59	-1.0
4,551,916	+		Shew_3822	0.62	-1.8
4,551,951	+		Shew_3822	0.66	-2.8
4,552,107	+		Shew_3822	0.82	-2.1
4,552,180	+		Shew_3822	0.89	-2.4
4,552,186	+		Shew_3822	0.90	-0.8
4,552,196	+				-2.0
4,552,203	+				-2.5
4,552,269	+				-2.1