Strain Fitness in Shewanella loihica PV-4 around Shew_3314

Experiment: MinMedia 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3311 and Shew_3312 are separated by 30 nucleotidesShew_3312 and Shew_3313 are separated by 2 nucleotidesShew_3313 and Shew_3314 overlap by 4 nucleotidesShew_3314 and Shew_3315 overlap by 8 nucleotidesShew_3315 and Shew_3316 are separated by 100 nucleotides Shew_3311: Shew_3311 - RNA polymerase factor sigma-54 (RefSeq), at 3,951,593 to 3,953,080 _3311 Shew_3312: Shew_3312 - sigma 54 modulation protein/ribosomal protein S30EA (RefSeq), at 3,953,111 to 3,953,398 _3312 Shew_3313: Shew_3313 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 3,953,401 to 3,953,844 _3313 Shew_3314: Shew_3314 - hypothetical protein (RefSeq), at 3,953,841 to 3,954,689 _3314 Shew_3315: Shew_3315 - phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 3,954,682 to 3,954,957 _3315 Shew_3316: Shew_3316 - magnesium transporter (RefSeq), at 3,955,058 to 3,956,425 _3316 Position (kb) 3953 3954 3955Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3953.051 kb on - strandat 3953.217 kb on - strand, within Shew_3312at 3953.569 kb on + strand, within Shew_3313at 3953.569 kb on + strand, within Shew_3313at 3954.150 kb on - strand, within Shew_3314at 3954.661 kb on - strandat 3954.696 kb on - strandat 3954.761 kb on - strand, within Shew_3315at 3955.078 kb on - strandat 3955.217 kb on + strand, within Shew_3316at 3955.371 kb on - strand, within Shew_3316at 3955.406 kb on + strand, within Shew_3316

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Per-strain Table

Position Strand Gene LocusTag Fraction MinMedia 20C
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3,953,051 - -6.4
3,953,217 - Shew_3312 0.37 -1.1
3,953,569 + Shew_3313 0.38 +0.4
3,953,569 + Shew_3313 0.38 -0.5
3,954,150 - Shew_3314 0.36 -1.6
3,954,661 - -1.2
3,954,696 - -0.7
3,954,761 - Shew_3315 0.29 -0.1
3,955,078 - -0.0
3,955,217 + Shew_3316 0.12 -0.1
3,955,371 - Shew_3316 0.23 -0.9
3,955,406 + Shew_3316 0.25 -0.2

Or see this region's nucleotide sequence