Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2443 and Shew_2444 are separated by 69 nucleotides Shew_2444 and Shew_2445 are separated by 144 nucleotides Shew_2445 and Shew_2446 are separated by 126 nucleotides Shew_2446 and Shew_2447 are separated by 234 nucleotides
Shew_2443: Shew_2443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,872,114 to 2,874,537
_2443
Shew_2444: Shew_2444 - hypothetical protein (RefSeq), at 2,874,607 to 2,874,987
_2444
Shew_2445: Shew_2445 - hypothetical protein (RefSeq), at 2,875,132 to 2,875,608
_2445
Shew_2446: Shew_2446 - GTP cyclohydrolase II (RefSeq), at 2,875,735 to 2,876,352
_2446
Shew_2447: Shew_2447 - hypothetical protein (RefSeq), at 2,876,587 to 2,876,943
_2447
Position (kb) 2875
2876 Strain fitness (log2 ratio) -1
0
1 at 2874.153 kb on + strand, within Shew_2443 at 2874.153 kb on + strand, within Shew_2443 at 2874.544 kb on + strand at 2874.559 kb on + strand at 2874.567 kb on - strand at 2874.679 kb on + strand, within Shew_2444 at 2874.687 kb on - strand, within Shew_2444 at 2875.269 kb on + strand, within Shew_2445 at 2875.557 kb on + strand, within Shew_2445 at 2875.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 2,874,153 + Shew_2443 0.84 +0.1 2,874,153 + Shew_2443 0.84 -0.4 2,874,544 + +0.1 2,874,559 + -0.6 2,874,567 - -0.1 2,874,679 + Shew_2444 0.19 -0.4 2,874,687 - Shew_2444 0.21 -0.3 2,875,269 + Shew_2445 0.29 +0.5 2,875,557 + Shew_2445 0.89 +0.1 2,875,577 - +0.1
Or see this region's nucleotide sequence