Strain Fitness in Shewanella loihica PV-4 around Shew_R0079

Experiment: MinMedia 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2109 and Shew_R0078 are separated by 776 nucleotidesShew_R0078 and Shew_R0079 are separated by 93 nucleotidesShew_R0079 and Shew_R0080 are separated by 49 nucleotidesShew_R0080 and Shew_2110 are separated by 117 nucleotides Shew_2109: Shew_2109 - sodium/hydrogen exchanger (RefSeq), at 2,442,406 to 2,444,337 _2109 Shew_R0078: Shew_R0078 - tRNA-OTHER (NCBI), at 2,445,114 to 2,445,202 _R0078 Shew_R0079: Shew_R0079 - tRNA-Asp (RefSeq), at 2,445,296 to 2,445,372 _R0079 Shew_R0080: Shew_R0080 - tRNA-Asp (RefSeq), at 2,445,422 to 2,445,498 _R0080 Shew_2110: Shew_2110 - hypothetical protein (RefSeq), at 2,445,616 to 2,446,938 _2110 Position (kb) 2445 2446Strain fitness (log2 ratio) -1 0 1at 2444.661 kb on + strandat 2445.818 kb on - strand, within Shew_2110at 2445.824 kb on + strand, within Shew_2110at 2445.824 kb on + strand, within Shew_2110at 2445.832 kb on - strand, within Shew_2110at 2445.905 kb on - strand, within Shew_2110

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Per-strain Table

Position Strand Gene LocusTag Fraction MinMedia 20C
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2,444,661 + +0.1
2,445,818 - Shew_2110 0.15 +0.5
2,445,824 + Shew_2110 0.16 +0.4
2,445,824 + Shew_2110 0.16 +0.7
2,445,832 - Shew_2110 0.16 +0.5
2,445,905 - Shew_2110 0.22 +0.6

Or see this region's nucleotide sequence