Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1917 and Shew_1918 are separated by 50 nucleotides Shew_1918 and Shew_1919 are separated by 11 nucleotides Shew_1919 and Shew_1920 are separated by 81 nucleotides Shew_1920 and Shew_1921 are separated by 291 nucleotides Shew_1921 and Shew_1922 are separated by 44 nucleotides
Shew_1917: Shew_1917 - flavodoxin FldA (RefSeq), at 2,215,844 to 2,216,371
_1917
Shew_1918: Shew_1918 - LexA regulated protein (RefSeq), at 2,216,422 to 2,216,694
_1918
Shew_1919: Shew_1919 - hypothetical protein (RefSeq), at 2,216,706 to 2,216,927
_1919
Shew_1920: Shew_1920 - alpha/beta hydrolase fold (RefSeq), at 2,217,009 to 2,217,776
_1920
Shew_1921: Shew_1921 - replication initiation regulator SeqA (RefSeq), at 2,218,068 to 2,218,598
_1921
Shew_1922: Shew_1922 - phosphoglucomutase (RefSeq), at 2,218,643 to 2,220,322
_1922
Position (kb) 2217
2218 Strain fitness (log2 ratio) -1
0
1 at 2216.658 kb on + strand, within Shew_1918 at 2217.287 kb on - strand, within Shew_1920 at 2217.389 kb on + strand, within Shew_1920 at 2217.489 kb on + strand, within Shew_1920 at 2217.492 kb on - strand, within Shew_1920 at 2217.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 2,216,658 + Shew_1918 0.86 +0.4 2,217,287 - Shew_1920 0.36 -0.2 2,217,389 + Shew_1920 0.49 +0.6 2,217,489 + Shew_1920 0.62 +0.3 2,217,492 - Shew_1920 0.63 +0.4 2,217,973 + +0.9
Or see this region's nucleotide sequence