Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1494 and Shew_1495 are separated by 92 nucleotides Shew_1495 and Shew_1496 are separated by 15 nucleotides Shew_1496 and Shew_1497 are separated by 195 nucleotides Shew_1497 and Shew_1498 overlap by 1 nucleotides
Shew_1494: Shew_1494 - hypothetical protein (RefSeq), at 1,717,732 to 1,718,055
_1494
Shew_1495: Shew_1495 - hypothetical protein (RefSeq), at 1,718,148 to 1,718,813
_1495
Shew_1496: Shew_1496 - putative lipoprotein (RefSeq), at 1,718,829 to 1,719,362
_1496
Shew_1497: Shew_1497 - hypothetical protein (RefSeq), at 1,719,558 to 1,720,292
_1497
Shew_1498: Shew_1498 - hypothetical protein (RefSeq), at 1,720,292 to 1,721,080
_1498
Position (kb) 1718
1719
1720 Strain fitness (log2 ratio) -1
0
1 at 1717.983 kb on + strand, within Shew_1494 at 1717.991 kb on - strand, within Shew_1494 at 1718.361 kb on - strand, within Shew_1495 at 1718.564 kb on - strand, within Shew_1495 at 1718.697 kb on - strand, within Shew_1495 at 1718.932 kb on - strand, within Shew_1496 at 1718.976 kb on + strand, within Shew_1496 at 1718.988 kb on - strand, within Shew_1496 at 1719.011 kb on - strand, within Shew_1496 at 1719.251 kb on + strand, within Shew_1496 at 1719.412 kb on - strand at 1719.507 kb on + strand at 1719.542 kb on + strand at 1719.542 kb on + strand at 1719.542 kb on + strand at 1719.542 kb on + strand at 1720.030 kb on - strand, within Shew_1497 at 1720.165 kb on - strand, within Shew_1497 at 1720.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 1,717,983 + Shew_1494 0.77 +0.0 1,717,991 - Shew_1494 0.80 -0.0 1,718,361 - Shew_1495 0.32 +0.1 1,718,564 - Shew_1495 0.62 -0.1 1,718,697 - Shew_1495 0.82 -0.2 1,718,932 - Shew_1496 0.19 -0.0 1,718,976 + Shew_1496 0.28 +0.2 1,718,988 - Shew_1496 0.30 +0.7 1,719,011 - Shew_1496 0.34 -0.2 1,719,251 + Shew_1496 0.79 +0.7 1,719,412 - -0.0 1,719,507 + -0.2 1,719,542 + -0.3 1,719,542 + +0.8 1,719,542 + -0.2 1,719,542 + -0.4 1,720,030 - Shew_1497 0.64 +0.3 1,720,165 - Shew_1497 0.83 -0.1 1,720,276 - +0.7
Or see this region's nucleotide sequence