Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0853 and Shew_0854 are separated by 75 nucleotides Shew_0854 and Shew_0855 are separated by 30 nucleotides Shew_0855 and Shew_0856 are separated by 113 nucleotides
Shew_0853: Shew_0853 - ABC transporter-related protein (RefSeq), at 975,818 to 977,593
_0853
Shew_0854: Shew_0854 - hypothetical protein (RefSeq), at 977,669 to 977,926
_0854
Shew_0855: Shew_0855 - hypothetical protein (RefSeq), at 977,957 to 978,166
_0855
Shew_0856: Shew_0856 - phosphoglycerate mutase (RefSeq), at 978,280 to 978,816
_0856
Position (kb) 977
978 Strain fitness (log2 ratio) -2
-1
0
1 at 976.783 kb on + strand, within Shew_0853 at 976.822 kb on + strand, within Shew_0853 at 976.865 kb on + strand, within Shew_0853 at 976.873 kb on - strand, within Shew_0853 at 976.914 kb on + strand, within Shew_0853 at 976.914 kb on + strand, within Shew_0853 at 977.176 kb on + strand, within Shew_0853 at 977.748 kb on + strand, within Shew_0854 at 977.808 kb on - strand, within Shew_0854 at 978.259 kb on + strand at 978.434 kb on + strand, within Shew_0856 at 978.442 kb on - strand, within Shew_0856 at 978.473 kb on + strand, within Shew_0856 at 978.673 kb on + strand, within Shew_0856 at 978.678 kb on + strand, within Shew_0856
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 976,783 + Shew_0853 0.54 -0.5 976,822 + Shew_0853 0.57 -0.8 976,865 + Shew_0853 0.59 -2.2 976,873 - Shew_0853 0.59 -0.4 976,914 + Shew_0853 0.62 -0.4 976,914 + Shew_0853 0.62 -0.1 977,176 + Shew_0853 0.76 +1.2 977,748 + Shew_0854 0.31 +0.2 977,808 - Shew_0854 0.54 +0.5 978,259 + -0.1 978,434 + Shew_0856 0.29 +0.3 978,442 - Shew_0856 0.30 +0.1 978,473 + Shew_0856 0.36 -0.1 978,673 + Shew_0856 0.73 +0.3 978,678 + Shew_0856 0.74 +0.5
Or see this region's nucleotide sequence