Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0823 and Shew_0824 are separated by 131 nucleotides Shew_0824 and Shew_0825 are separated by 156 nucleotides Shew_0825 and Shew_0826 are separated by 330 nucleotides
Shew_0823: Shew_0823 - LysR family transcriptional regulator (RefSeq), at 946,201 to 947,106
_0823
Shew_0824: Shew_0824 - NAD-dependent epimerase/dehydratase (RefSeq), at 947,238 to 947,879
_0824
Shew_0825: Shew_0825 - ribose-5-phosphate isomerase A (RefSeq), at 948,036 to 948,695
_0825
Shew_0826: Shew_0826 - hypothetical protein (RefSeq), at 949,026 to 949,949
_0826
Position (kb) 948
949 Strain fitness (log2 ratio) -1
0
1 at 947.461 kb on + strand, within Shew_0824 at 947.588 kb on - strand, within Shew_0824 at 947.618 kb on + strand, within Shew_0824 at 947.788 kb on + strand, within Shew_0824 at 947.958 kb on + strand at 947.966 kb on - strand at 947.966 kb on - strand at 948.015 kb on + strand at 948.699 kb on - strand at 948.752 kb on + strand at 948.911 kb on + strand at 949.226 kb on + strand, within Shew_0826
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 947,461 + Shew_0824 0.35 +0.7 947,588 - Shew_0824 0.55 +0.1 947,618 + Shew_0824 0.59 +0.4 947,788 + Shew_0824 0.86 -0.1 947,958 + +0.5 947,966 - -0.5 947,966 - +0.3 948,015 + +0.8 948,699 - +0.8 948,752 + +0.4 948,911 + -0.1 949,226 + Shew_0826 0.22 +0.1
Or see this region's nucleotide sequence