Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0705 and Shew_0706 are separated by 100 nucleotides Shew_0706 and Shew_0707 are separated by 142 nucleotides Shew_0707 and Shew_0708 are separated by 117 nucleotides
Shew_0705: Shew_0705 - hypothetical protein (RefSeq), at 799,500 to 800,441
_0705
Shew_0706: Shew_0706 - short-chain dehydrogenase/reductase SDR (RefSeq), at 800,542 to 801,219
_0706
Shew_0707: Shew_0707 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 801,362 to 801,841
_0707
Shew_0708: Shew_0708 - hypothetical protein (RefSeq), at 801,959 to 802,786
_0708
Position (kb) 801
802 Strain fitness (log2 ratio) -1
0
1 at 800.372 kb on + strand at 800.522 kb on - strand at 800.525 kb on + strand at 800.525 kb on + strand at 800.530 kb on + strand at 800.533 kb on - strand at 800.540 kb on + strand at 800.809 kb on - strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 801.240 kb on + strand at 801.240 kb on + strand at 801.248 kb on - strand at 801.248 kb on - strand at 801.478 kb on + strand, within Shew_0707 at 801.486 kb on - strand, within Shew_0707 at 801.506 kb on - strand, within Shew_0707 at 801.773 kb on + strand, within Shew_0707 at 801.845 kb on - strand at 801.904 kb on - strand at 801.949 kb on + strand at 802.189 kb on - strand, within Shew_0708 at 802.572 kb on + strand, within Shew_0708 at 802.672 kb on + strand, within Shew_0708 at 802.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 800,372 + -0.1 800,522 - +0.2 800,525 + -0.1 800,525 + -0.1 800,530 + +0.1 800,533 - -0.4 800,540 + +0.0 800,809 - Shew_0706 0.39 -0.4 800,982 + Shew_0706 0.65 -0.0 800,982 + Shew_0706 0.65 -0.3 801,240 + -0.5 801,240 + -0.1 801,248 - +0.5 801,248 - -0.3 801,478 + Shew_0707 0.24 +0.2 801,486 - Shew_0707 0.26 +0.1 801,506 - Shew_0707 0.30 +0.0 801,773 + Shew_0707 0.86 +1.0 801,845 - -0.1 801,904 - +0.2 801,949 + +0.7 802,189 - Shew_0708 0.28 +0.2 802,572 + Shew_0708 0.74 +0.1 802,672 + Shew_0708 0.86 +0.1 802,816 + -0.1
Or see this region's nucleotide sequence