Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0642 and Shew_0643 are separated by 8 nucleotides Shew_0643 and Shew_0644 overlap by 8 nucleotides Shew_0644 and Shew_0645 are separated by 9 nucleotides
Shew_0642: Shew_0642 - type II secretion system protein (RefSeq), at 730,453 to 731,316
_0642
Shew_0643: Shew_0643 - type II secretion system protein (RefSeq), at 731,325 to 732,176
_0643
Shew_0644: Shew_0644 - FHA domain-containing protein (RefSeq), at 732,169 to 733,878
_0644
Shew_0645: Shew_0645 - type II and III secretion system protein (RefSeq), at 733,888 to 735,198
_0645
Position (kb) 732
733
734 Strain fitness (log2 ratio) -1
0
1 at 731.187 kb on + strand, within Shew_0642 at 731.195 kb on - strand, within Shew_0642 at 731.365 kb on + strand at 731.564 kb on + strand, within Shew_0643 at 731.601 kb on + strand, within Shew_0643 at 731.703 kb on - strand, within Shew_0643 at 732.281 kb on + strand at 732.289 kb on - strand at 732.553 kb on + strand, within Shew_0644 at 732.818 kb on - strand, within Shew_0644 at 732.818 kb on - strand, within Shew_0644 at 733.265 kb on - strand, within Shew_0644 at 733.371 kb on + strand, within Shew_0644 at 733.469 kb on + strand, within Shew_0644 at 733.541 kb on - strand, within Shew_0644 at 733.884 kb on + strand at 733.987 kb on - strand at 733.987 kb on - strand at 734.132 kb on - strand, within Shew_0645 at 734.132 kb on - strand, within Shew_0645 at 734.690 kb on + strand, within Shew_0645
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 731,187 + Shew_0642 0.85 -0.3 731,195 - Shew_0642 0.86 -0.5 731,365 + -0.0 731,564 + Shew_0643 0.28 +0.2 731,601 + Shew_0643 0.32 +0.1 731,703 - Shew_0643 0.44 -1.4 732,281 + +0.3 732,289 - -0.5 732,553 + Shew_0644 0.22 +0.2 732,818 - Shew_0644 0.38 -0.3 732,818 - Shew_0644 0.38 +1.2 733,265 - Shew_0644 0.64 +0.6 733,371 + Shew_0644 0.70 +0.3 733,469 + Shew_0644 0.76 +0.2 733,541 - Shew_0644 0.80 +0.0 733,884 + +0.3 733,987 - -0.8 733,987 - -1.1 734,132 - Shew_0645 0.19 -0.4 734,132 - Shew_0645 0.19 -0.5 734,690 + Shew_0645 0.61 +0.5
Or see this region's nucleotide sequence