Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0418 and Shew_0419 are separated by 35 nucleotides Shew_0419 and Shew_0420 are separated by 0 nucleotides
Shew_0418: Shew_0418 - arsenical-resistance protein (RefSeq), at 471,758 to 472,792
_0418
Shew_0419: Shew_0419 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 472,828 to 473,838
_0419
Shew_0420: Shew_0420 - major facilitator transporter (RefSeq), at 473,839 to 475,071
_0420
Position (kb) 472
473
474 Strain fitness (log2 ratio) -1
0
1 at 472.188 kb on + strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.280 kb on + strand, within Shew_0418 at 472.288 kb on - strand, within Shew_0418 at 472.292 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.413 kb on - strand, within Shew_0418 at 472.416 kb on + strand, within Shew_0418 at 472.435 kb on + strand, within Shew_0418 at 472.473 kb on - strand, within Shew_0418 at 472.595 kb on + strand, within Shew_0418 at 472.690 kb on - strand at 472.794 kb on - strand at 473.607 kb on + strand, within Shew_0419 at 473.615 kb on - strand, within Shew_0419 at 473.615 kb on - strand, within Shew_0419 at 473.795 kb on + strand at 473.904 kb on + strand at 474.621 kb on + strand, within Shew_0420 at 474.643 kb on + strand, within Shew_0420
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 472,188 + Shew_0418 0.42 +0.3 472,196 - Shew_0418 0.42 +0.2 472,196 - Shew_0418 0.42 -0.1 472,280 + Shew_0418 0.50 +0.8 472,288 - Shew_0418 0.51 +0.0 472,292 + Shew_0418 0.52 -0.1 472,314 + Shew_0418 0.54 -0.6 472,314 + Shew_0418 0.54 +0.8 472,405 + Shew_0418 0.63 +0.1 472,405 + Shew_0418 0.63 -0.1 472,413 - Shew_0418 0.63 -0.2 472,416 + Shew_0418 0.64 +0.2 472,435 + Shew_0418 0.65 -0.1 472,473 - Shew_0418 0.69 +0.1 472,595 + Shew_0418 0.81 +0.0 472,690 - -0.2 472,794 - -0.1 473,607 + Shew_0419 0.77 +0.3 473,615 - Shew_0419 0.78 -0.1 473,615 - Shew_0419 0.78 -0.1 473,795 + -0.3 473,904 + +0.3 474,621 + Shew_0420 0.63 +0.0 474,643 + Shew_0420 0.65 -0.1
Or see this region's nucleotide sequence