Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0371 and Shew_0372 are separated by 94 nucleotides Shew_0372 and Shew_0373 are separated by 21 nucleotides Shew_0373 and hslU are separated by 76 nucleotides
Shew_0371: Shew_0371 - AraC family transcriptional regulator (RefSeq), at 419,234 to 420,100
_0371
Shew_0372: Shew_0372 - hypothetical protein (RefSeq), at 420,195 to 420,629
_0372
Shew_0373: Shew_0373 - hypothetical protein (RefSeq), at 420,651 to 421,046
_0373
Shew_0374: hslU - ATP-dependent protease ATP-binding subunit (RefSeq), at 421,123 to 422,448
hslU
Position (kb) 420
421 Strain fitness (log2 ratio) -1
0
1 at 419.466 kb on + strand, within Shew_0371 at 419.761 kb on + strand, within Shew_0371 at 419.890 kb on + strand, within Shew_0371 at 420.095 kb on + strand at 420.254 kb on + strand, within Shew_0372 at 420.343 kb on + strand, within Shew_0372 at 420.613 kb on + strand at 420.780 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 421.058 kb on + strand at 421.559 kb on + strand, within hslU
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 419,466 + Shew_0371 0.27 +0.2 419,761 + Shew_0371 0.61 -0.4 419,890 + Shew_0371 0.76 -0.1 420,095 + -0.9 420,254 + Shew_0372 0.14 +1.0 420,343 + Shew_0372 0.34 +0.2 420,613 + -0.3 420,780 + Shew_0373 0.33 -0.6 420,886 + Shew_0373 0.59 -0.5 420,886 + Shew_0373 0.59 +0.0 421,058 + -0.9 421,559 + hslU Shew_0374 0.33 -0.2
Or see this region's nucleotide sequence