Experiment: MinMedia 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0206 and Shew_0207 are separated by 171 nucleotides Shew_0207 and Shew_0208 are separated by 184 nucleotides
Shew_0206: Shew_0206 - argininosuccinate lyase (RefSeq), at 219,411 to 220,772
_0206
Shew_0207: Shew_0207 - 1A family penicillin-binding protein (RefSeq), at 220,944 to 223,529
_0207
Shew_0208: Shew_0208 - type IV pilus assembly protein PilM (RefSeq), at 223,714 to 224,793
_0208
Position (kb) 220
221
222
223
224 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 219.957 kb on + strand, within Shew_0206 at 220.015 kb on + strand, within Shew_0206 at 220.357 kb on - strand, within Shew_0206 at 220.423 kb on + strand, within Shew_0206 at 223.417 kb on - strand at 223.749 kb on - strand at 223.792 kb on - strand at 223.797 kb on + strand at 223.840 kb on - strand, within Shew_0208 at 223.845 kb on + strand, within Shew_0208 at 223.894 kb on + strand, within Shew_0208 at 223.902 kb on - strand, within Shew_0208 at 223.904 kb on + strand, within Shew_0208 at 223.912 kb on - strand, within Shew_0208 at 224.008 kb on - strand, within Shew_0208 at 224.020 kb on - strand, within Shew_0208 at 224.114 kb on + strand, within Shew_0208 at 224.123 kb on + strand, within Shew_0208 at 224.131 kb on - strand, within Shew_0208 at 224.288 kb on + strand, within Shew_0208
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 20C remove 219,957 + Shew_0206 0.40 -7.8 220,015 + Shew_0206 0.44 -6.8 220,357 - Shew_0206 0.69 -6.7 220,423 + Shew_0206 0.74 -7.6 223,417 - -1.0 223,749 - +0.1 223,792 - +0.4 223,797 + -0.2 223,840 - Shew_0208 0.12 +0.9 223,845 + Shew_0208 0.12 +0.3 223,894 + Shew_0208 0.17 +0.2 223,902 - Shew_0208 0.17 -0.5 223,904 + Shew_0208 0.18 +0.8 223,912 - Shew_0208 0.18 +0.2 224,008 - Shew_0208 0.27 +0.1 224,020 - Shew_0208 0.28 +0.0 224,114 + Shew_0208 0.37 +0.2 224,123 + Shew_0208 0.38 +0.3 224,131 - Shew_0208 0.39 -0.1 224,288 + Shew_0208 0.53 +0.1
Or see this region's nucleotide sequence