Experiment: Inosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2367 and Dshi_2368 overlap by 1 nucleotides Dshi_2368 and Dshi_2369 are separated by 131 nucleotides Dshi_2369 and Dshi_2370 are separated by 94 nucleotides Dshi_2370 and Dshi_2371 are separated by 237 nucleotides
Dshi_2367: Dshi_2367 - alginate regulatory protein AlgP (RefSeq), at 2,500,927 to 2,501,649
_2367
Dshi_2368: Dshi_2368 - urease, beta subunit (RefSeq), at 2,501,649 to 2,501,954
_2368
Dshi_2369: Dshi_2369 - urease, gamma subunit (RefSeq), at 2,502,086 to 2,502,388
_2369
Dshi_2370: Dshi_2370 - Urease accessory protein UreD (RefSeq), at 2,502,483 to 2,503,328
_2370
Dshi_2371: Dshi_2371 - dihydroorotase, homodimeric type (RefSeq), at 2,503,566 to 2,504,603
_2371
Position (kb)
2502
2503
2504 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2501.545 kb on - strand, within Dshi_2367 at 2501.614 kb on + strand at 2501.623 kb on + strand at 2501.623 kb on - strand at 2501.631 kb on - strand at 2501.698 kb on + strand, within Dshi_2368 at 2501.713 kb on + strand, within Dshi_2368 at 2501.789 kb on - strand, within Dshi_2368 at 2501.803 kb on + strand, within Dshi_2368 at 2501.815 kb on + strand, within Dshi_2368 at 2501.852 kb on - strand, within Dshi_2368 at 2501.855 kb on - strand, within Dshi_2368 at 2501.860 kb on - strand, within Dshi_2368 at 2501.869 kb on + strand, within Dshi_2368 at 2501.881 kb on + strand, within Dshi_2368 at 2501.912 kb on + strand, within Dshi_2368 at 2501.990 kb on - strand at 2502.032 kb on + strand at 2502.032 kb on + strand at 2502.032 kb on + strand at 2502.032 kb on + strand at 2502.040 kb on - strand at 2502.040 kb on - strand at 2502.100 kb on + strand at 2502.252 kb on + strand, within Dshi_2369 at 2502.260 kb on - strand, within Dshi_2369 at 2502.275 kb on - strand, within Dshi_2369 at 2502.275 kb on - strand, within Dshi_2369 at 2502.294 kb on - strand, within Dshi_2369 at 2502.389 kb on - strand at 2502.404 kb on - strand at 2502.481 kb on + strand at 2502.489 kb on - strand at 2502.514 kb on - strand at 2502.591 kb on - strand, within Dshi_2370 at 2502.606 kb on + strand, within Dshi_2370 at 2502.629 kb on - strand, within Dshi_2370 at 2502.828 kb on + strand, within Dshi_2370 at 2502.897 kb on + strand, within Dshi_2370 at 2502.915 kb on - strand, within Dshi_2370 at 2502.958 kb on + strand, within Dshi_2370 at 2502.973 kb on + strand, within Dshi_2370 at 2502.979 kb on - strand, within Dshi_2370 at 2502.981 kb on - strand, within Dshi_2370 at 2503.018 kb on - strand, within Dshi_2370 at 2503.078 kb on + strand, within Dshi_2370 at 2503.079 kb on + strand, within Dshi_2370 at 2503.079 kb on + strand, within Dshi_2370 at 2503.177 kb on + strand, within Dshi_2370 at 2503.180 kb on - strand, within Dshi_2370 at 2503.201 kb on + strand, within Dshi_2370 at 2503.222 kb on - strand, within Dshi_2370 at 2503.222 kb on - strand, within Dshi_2370 at 2503.304 kb on + strand at 2503.318 kb on - strand at 2503.348 kb on + strand at 2503.351 kb on - strand at 2503.356 kb on - strand at 2503.625 kb on + strand at 2503.631 kb on - strand at 2503.694 kb on - strand, within Dshi_2371 at 2503.700 kb on + strand, within Dshi_2371 at 2503.716 kb on + strand, within Dshi_2371 at 2503.759 kb on - strand, within Dshi_2371 at 2503.795 kb on - strand, within Dshi_2371 at 2503.859 kb on + strand, within Dshi_2371 at 2503.955 kb on + strand, within Dshi_2371 at 2504.039 kb on - strand, within Dshi_2371 at 2504.056 kb on + strand, within Dshi_2371 at 2504.114 kb on + strand, within Dshi_2371 at 2504.143 kb on + strand, within Dshi_2371 at 2504.213 kb on - strand, within Dshi_2371 at 2504.225 kb on + strand, within Dshi_2371
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (N) remove 2,501,545 - Dshi_2367 0.85 -0.4 2,501,614 + -0.1 2,501,623 + -0.5 2,501,623 - -0.4 2,501,631 - -1.8 2,501,698 + Dshi_2368 0.16 +0.9 2,501,713 + Dshi_2368 0.21 +0.5 2,501,789 - Dshi_2368 0.46 -1.5 2,501,803 + Dshi_2368 0.50 -3.2 2,501,815 + Dshi_2368 0.54 -0.7 2,501,852 - Dshi_2368 0.66 -0.5 2,501,855 - Dshi_2368 0.67 -0.2 2,501,860 - Dshi_2368 0.69 -0.6 2,501,869 + Dshi_2368 0.72 -2.6 2,501,881 + Dshi_2368 0.76 -3.9 2,501,912 + Dshi_2368 0.86 -0.7 2,501,990 - +0.5 2,502,032 + -1.1 2,502,032 + -0.4 2,502,032 + -0.1 2,502,032 + -0.8 2,502,040 - +0.4 2,502,040 - +0.0 2,502,100 + -1.3 2,502,252 + Dshi_2369 0.55 -0.4 2,502,260 - Dshi_2369 0.57 -0.0 2,502,275 - Dshi_2369 0.62 -1.3 2,502,275 - Dshi_2369 0.62 -0.1 2,502,294 - Dshi_2369 0.69 -0.4 2,502,389 - -1.2 2,502,404 - -1.0 2,502,481 + -0.3 2,502,489 - -1.1 2,502,514 - +0.1 2,502,591 - Dshi_2370 0.13 +0.8 2,502,606 + Dshi_2370 0.15 -0.0 2,502,629 - Dshi_2370 0.17 -0.5 2,502,828 + Dshi_2370 0.41 -1.2 2,502,897 + Dshi_2370 0.49 -0.3 2,502,915 - Dshi_2370 0.51 -0.3 2,502,958 + Dshi_2370 0.56 -0.6 2,502,973 + Dshi_2370 0.58 -0.8 2,502,979 - Dshi_2370 0.59 -0.4 2,502,981 - Dshi_2370 0.59 +0.1 2,503,018 - Dshi_2370 0.63 -1.4 2,503,078 + Dshi_2370 0.70 -2.2 2,503,079 + Dshi_2370 0.70 -0.8 2,503,079 + Dshi_2370 0.70 -1.8 2,503,177 + Dshi_2370 0.82 -2.0 2,503,180 - Dshi_2370 0.82 -2.5 2,503,201 + Dshi_2370 0.85 -3.0 2,503,222 - Dshi_2370 0.87 -0.9 2,503,222 - Dshi_2370 0.87 -0.0 2,503,304 + -1.5 2,503,318 - -1.6 2,503,348 + -0.5 2,503,351 - -0.7 2,503,356 - +0.1 2,503,625 + -0.2 2,503,631 - -3.5 2,503,694 - Dshi_2371 0.12 -4.0 2,503,700 + Dshi_2371 0.13 -2.5 2,503,716 + Dshi_2371 0.14 -4.1 2,503,759 - Dshi_2371 0.19 -1.9 2,503,795 - Dshi_2371 0.22 -2.5 2,503,859 + Dshi_2371 0.28 -2.3 2,503,955 + Dshi_2371 0.37 -1.0 2,504,039 - Dshi_2371 0.46 -3.5 2,504,056 + Dshi_2371 0.47 -1.6 2,504,114 + Dshi_2371 0.53 -2.0 2,504,143 + Dshi_2371 0.56 -2.9 2,504,213 - Dshi_2371 0.62 -3.3 2,504,225 + Dshi_2371 0.63 -1.7
Or see this region's nucleotide sequence