Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2370

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2367 and Dshi_2368 overlap by 1 nucleotidesDshi_2368 and Dshi_2369 are separated by 131 nucleotidesDshi_2369 and Dshi_2370 are separated by 94 nucleotidesDshi_2370 and Dshi_2371 are separated by 237 nucleotides Dshi_2367: Dshi_2367 - alginate regulatory protein AlgP (RefSeq), at 2,500,927 to 2,501,649 _2367 Dshi_2368: Dshi_2368 - urease, beta subunit (RefSeq), at 2,501,649 to 2,501,954 _2368 Dshi_2369: Dshi_2369 - urease, gamma subunit (RefSeq), at 2,502,086 to 2,502,388 _2369 Dshi_2370: Dshi_2370 - Urease accessory protein UreD (RefSeq), at 2,502,483 to 2,503,328 _2370 Dshi_2371: Dshi_2371 - dihydroorotase, homodimeric type (RefSeq), at 2,503,566 to 2,504,603 _2371 Position (kb) 2502 2503 2504Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2501.545 kb on - strand, within Dshi_2367at 2501.614 kb on + strandat 2501.623 kb on + strandat 2501.623 kb on - strandat 2501.631 kb on - strandat 2501.698 kb on + strand, within Dshi_2368at 2501.713 kb on + strand, within Dshi_2368at 2501.789 kb on - strand, within Dshi_2368at 2501.803 kb on + strand, within Dshi_2368at 2501.815 kb on + strand, within Dshi_2368at 2501.852 kb on - strand, within Dshi_2368at 2501.855 kb on - strand, within Dshi_2368at 2501.860 kb on - strand, within Dshi_2368at 2501.869 kb on + strand, within Dshi_2368at 2501.881 kb on + strand, within Dshi_2368at 2501.912 kb on + strand, within Dshi_2368at 2501.990 kb on - strandat 2502.032 kb on + strandat 2502.032 kb on + strandat 2502.032 kb on + strandat 2502.032 kb on + strandat 2502.040 kb on - strandat 2502.040 kb on - strandat 2502.100 kb on + strandat 2502.252 kb on + strand, within Dshi_2369at 2502.260 kb on - strand, within Dshi_2369at 2502.275 kb on - strand, within Dshi_2369at 2502.275 kb on - strand, within Dshi_2369at 2502.294 kb on - strand, within Dshi_2369at 2502.389 kb on - strandat 2502.404 kb on - strandat 2502.481 kb on + strandat 2502.489 kb on - strandat 2502.514 kb on - strandat 2502.591 kb on - strand, within Dshi_2370at 2502.606 kb on + strand, within Dshi_2370at 2502.629 kb on - strand, within Dshi_2370at 2502.828 kb on + strand, within Dshi_2370at 2502.897 kb on + strand, within Dshi_2370at 2502.915 kb on - strand, within Dshi_2370at 2502.958 kb on + strand, within Dshi_2370at 2502.973 kb on + strand, within Dshi_2370at 2502.979 kb on - strand, within Dshi_2370at 2502.981 kb on - strand, within Dshi_2370at 2503.018 kb on - strand, within Dshi_2370at 2503.078 kb on + strand, within Dshi_2370at 2503.079 kb on + strand, within Dshi_2370at 2503.079 kb on + strand, within Dshi_2370at 2503.177 kb on + strand, within Dshi_2370at 2503.180 kb on - strand, within Dshi_2370at 2503.201 kb on + strand, within Dshi_2370at 2503.222 kb on - strand, within Dshi_2370at 2503.222 kb on - strand, within Dshi_2370at 2503.304 kb on + strandat 2503.318 kb on - strandat 2503.348 kb on + strandat 2503.351 kb on - strandat 2503.356 kb on - strandat 2503.625 kb on + strandat 2503.631 kb on - strandat 2503.694 kb on - strand, within Dshi_2371at 2503.700 kb on + strand, within Dshi_2371at 2503.716 kb on + strand, within Dshi_2371at 2503.759 kb on - strand, within Dshi_2371at 2503.795 kb on - strand, within Dshi_2371at 2503.859 kb on + strand, within Dshi_2371at 2503.955 kb on + strand, within Dshi_2371at 2504.039 kb on - strand, within Dshi_2371at 2504.056 kb on + strand, within Dshi_2371at 2504.114 kb on + strand, within Dshi_2371at 2504.143 kb on + strand, within Dshi_2371at 2504.213 kb on - strand, within Dshi_2371at 2504.225 kb on + strand, within Dshi_2371

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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2,501,545 - Dshi_2367 0.85 -0.4
2,501,614 + -0.1
2,501,623 + -0.5
2,501,623 - -0.4
2,501,631 - -1.8
2,501,698 + Dshi_2368 0.16 +0.9
2,501,713 + Dshi_2368 0.21 +0.5
2,501,789 - Dshi_2368 0.46 -1.5
2,501,803 + Dshi_2368 0.50 -3.2
2,501,815 + Dshi_2368 0.54 -0.7
2,501,852 - Dshi_2368 0.66 -0.5
2,501,855 - Dshi_2368 0.67 -0.2
2,501,860 - Dshi_2368 0.69 -0.6
2,501,869 + Dshi_2368 0.72 -2.6
2,501,881 + Dshi_2368 0.76 -3.9
2,501,912 + Dshi_2368 0.86 -0.7
2,501,990 - +0.5
2,502,032 + -1.1
2,502,032 + -0.4
2,502,032 + -0.1
2,502,032 + -0.8
2,502,040 - +0.4
2,502,040 - +0.0
2,502,100 + -1.3
2,502,252 + Dshi_2369 0.55 -0.4
2,502,260 - Dshi_2369 0.57 -0.0
2,502,275 - Dshi_2369 0.62 -1.3
2,502,275 - Dshi_2369 0.62 -0.1
2,502,294 - Dshi_2369 0.69 -0.4
2,502,389 - -1.2
2,502,404 - -1.0
2,502,481 + -0.3
2,502,489 - -1.1
2,502,514 - +0.1
2,502,591 - Dshi_2370 0.13 +0.8
2,502,606 + Dshi_2370 0.15 -0.0
2,502,629 - Dshi_2370 0.17 -0.5
2,502,828 + Dshi_2370 0.41 -1.2
2,502,897 + Dshi_2370 0.49 -0.3
2,502,915 - Dshi_2370 0.51 -0.3
2,502,958 + Dshi_2370 0.56 -0.6
2,502,973 + Dshi_2370 0.58 -0.8
2,502,979 - Dshi_2370 0.59 -0.4
2,502,981 - Dshi_2370 0.59 +0.1
2,503,018 - Dshi_2370 0.63 -1.4
2,503,078 + Dshi_2370 0.70 -2.2
2,503,079 + Dshi_2370 0.70 -0.8
2,503,079 + Dshi_2370 0.70 -1.8
2,503,177 + Dshi_2370 0.82 -2.0
2,503,180 - Dshi_2370 0.82 -2.5
2,503,201 + Dshi_2370 0.85 -3.0
2,503,222 - Dshi_2370 0.87 -0.9
2,503,222 - Dshi_2370 0.87 -0.0
2,503,304 + -1.5
2,503,318 - -1.6
2,503,348 + -0.5
2,503,351 - -0.7
2,503,356 - +0.1
2,503,625 + -0.2
2,503,631 - -3.5
2,503,694 - Dshi_2371 0.12 -4.0
2,503,700 + Dshi_2371 0.13 -2.5
2,503,716 + Dshi_2371 0.14 -4.1
2,503,759 - Dshi_2371 0.19 -1.9
2,503,795 - Dshi_2371 0.22 -2.5
2,503,859 + Dshi_2371 0.28 -2.3
2,503,955 + Dshi_2371 0.37 -1.0
2,504,039 - Dshi_2371 0.46 -3.5
2,504,056 + Dshi_2371 0.47 -1.6
2,504,114 + Dshi_2371 0.53 -2.0
2,504,143 + Dshi_2371 0.56 -2.9
2,504,213 - Dshi_2371 0.62 -3.3
2,504,225 + Dshi_2371 0.63 -1.7

Or see this region's nucleotide sequence