Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0619

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0617 and Dshi_0618 are separated by 44 nucleotidesDshi_0618 and Dshi_0619 are separated by 228 nucleotidesDshi_0619 and Dshi_0620 overlap by 4 nucleotidesDshi_0620 and Dshi_0621 are separated by 159 nucleotides Dshi_0617: Dshi_0617 - ATPase AAA-2 domain protein (RefSeq), at 609,070 to 611,685 _0617 Dshi_0618: Dshi_0618 - hypothetical protein (RefSeq), at 611,730 to 612,320 _0618 Dshi_0619: Dshi_0619 - hypothetical protein (RefSeq), at 612,549 to 612,863 _0619 Dshi_0620: Dshi_0620 - short-chain dehydrogenase/reductase SDR (RefSeq), at 612,860 to 613,612 _0620 Dshi_0621: Dshi_0621 - beta-Ig-H3/fasciclin (RefSeq), at 613,772 to 614,260 _0621 Position (kb) 612 613Strain fitness (log2 ratio) -2 -1 0 1at 611.707 kb on + strandat 611.775 kb on + strandat 611.863 kb on + strand, within Dshi_0618at 611.974 kb on - strand, within Dshi_0618at 612.296 kb on - strandat 612.376 kb on + strandat 612.383 kb on + strandat 612.391 kb on - strandat 612.391 kb on - strandat 612.442 kb on + strandat 612.526 kb on + strandat 612.527 kb on + strandat 612.600 kb on - strand, within Dshi_0619at 612.651 kb on - strand, within Dshi_0619at 612.673 kb on + strand, within Dshi_0619at 612.707 kb on - strand, within Dshi_0619at 612.746 kb on + strand, within Dshi_0619at 612.811 kb on + strand, within Dshi_0619at 612.819 kb on - strand, within Dshi_0619at 612.848 kb on - strandat 612.915 kb on + strandat 613.009 kb on - strand, within Dshi_0620at 613.053 kb on + strand, within Dshi_0620at 613.078 kb on + strand, within Dshi_0620at 613.088 kb on + strand, within Dshi_0620at 613.120 kb on + strand, within Dshi_0620at 613.128 kb on + strand, within Dshi_0620at 613.130 kb on - strand, within Dshi_0620at 613.169 kb on + strand, within Dshi_0620at 613.186 kb on + strand, within Dshi_0620at 613.188 kb on + strand, within Dshi_0620at 613.188 kb on + strand, within Dshi_0620at 613.226 kb on - strand, within Dshi_0620at 613.249 kb on + strand, within Dshi_0620at 613.343 kb on + strand, within Dshi_0620at 613.356 kb on + strand, within Dshi_0620at 613.435 kb on + strand, within Dshi_0620at 613.468 kb on + strand, within Dshi_0620at 613.468 kb on + strand, within Dshi_0620at 613.476 kb on - strand, within Dshi_0620at 613.478 kb on + strand, within Dshi_0620at 613.591 kb on + strandat 613.709 kb on - strandat 613.710 kb on + strandat 613.715 kb on + strandat 613.723 kb on - strandat 613.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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611,707 + -1.3
611,775 + +1.6
611,863 + Dshi_0618 0.23 +0.7
611,974 - Dshi_0618 0.41 -0.8
612,296 - +1.4
612,376 + +0.5
612,383 + -1.3
612,391 - +0.2
612,391 - +0.1
612,442 + +0.0
612,526 + -0.1
612,527 + -0.3
612,600 - Dshi_0619 0.16 -0.2
612,651 - Dshi_0619 0.32 -1.4
612,673 + Dshi_0619 0.39 -0.3
612,707 - Dshi_0619 0.50 -0.8
612,746 + Dshi_0619 0.63 -0.9
612,811 + Dshi_0619 0.83 -0.4
612,819 - Dshi_0619 0.86 +1.4
612,848 - -1.9
612,915 + +0.0
613,009 - Dshi_0620 0.20 +0.0
613,053 + Dshi_0620 0.26 -1.1
613,078 + Dshi_0620 0.29 +0.5
613,088 + Dshi_0620 0.30 -1.2
613,120 + Dshi_0620 0.35 +1.0
613,128 + Dshi_0620 0.36 -1.7
613,130 - Dshi_0620 0.36 -0.4
613,169 + Dshi_0620 0.41 -1.0
613,186 + Dshi_0620 0.43 -1.9
613,188 + Dshi_0620 0.44 +0.6
613,188 + Dshi_0620 0.44 -0.2
613,226 - Dshi_0620 0.49 +0.1
613,249 + Dshi_0620 0.52 +0.2
613,343 + Dshi_0620 0.64 +0.1
613,356 + Dshi_0620 0.66 +0.7
613,435 + Dshi_0620 0.76 +0.5
613,468 + Dshi_0620 0.81 +1.1
613,468 + Dshi_0620 0.81 +0.0
613,476 - Dshi_0620 0.82 +0.3
613,478 + Dshi_0620 0.82 -0.3
613,591 + +1.1
613,709 - -0.4
613,710 + -0.4
613,715 + -0.1
613,723 - +0.1
613,819 - +0.3

Or see this region's nucleotide sequence