Strain Fitness in Pantoea sp. MT58 around IAI47_15690

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,306,960	+		IAI47_15680	0.84	-2.3
3,306,961	-		IAI47_15680	0.84	+0.7
3,307,010	+		IAI47_15680	0.89	+0.5
3,307,010	+		IAI47_15680	0.89	+0.9
3,307,010	+		IAI47_15680	0.89	-0.5
3,307,010	+		IAI47_15680	0.89	-0.0
3,307,011	-		IAI47_15680	0.89	-0.6
3,307,011	-		IAI47_15680	0.89	-0.6
3,307,032	+				-3.6
3,307,070	+				-0.9
3,307,103	+				-0.6
3,307,103	+				-1.6
3,307,103	+				-0.9
3,307,103	+				+0.0
3,307,103	+				-0.4
3,307,104	-				+0.6
3,307,104	-				-2.1
3,307,104	-				-0.2
3,307,104	-				+0.4
3,307,159	-				+1.5
3,307,173	+				-1.0
3,307,173	+				-0.2
3,307,173	+				+1.0
3,307,173	+				-0.5
3,307,173	+				+1.0
3,307,173	+				-2.9
3,307,173	+				+0.7
3,307,174	-				+0.8
3,307,174	-				+0.9
3,307,174	-				+1.0
3,307,174	-				+0.7
3,307,174	-				-0.1
3,307,174	-				+0.6
3,307,174	-				-0.3
3,307,174	-				-0.2
3,307,175	+				-1.1
3,307,175	+				+1.8
3,307,175	+				-0.7
3,307,175	+				+1.1
3,307,175	+				-1.8
3,307,175	+				-0.9
3,307,175	+				+1.2
3,307,175	+				+0.7
3,307,175	+				+0.7
3,307,175	+				+1.1
3,307,175	+				+0.8
3,307,175	+				-0.8
3,307,176	-				+0.3
3,307,176	-				+0.7
3,307,176	-				-0.6
3,307,176	-				-1.6
3,307,176	-				+2.0
3,307,176	-				+0.7
3,307,176	-				-0.6
3,307,176	-				+0.1
3,307,176	-				+1.7
3,307,176	-				+1.3
3,307,176	-				-0.2
3,307,176	-				-0.0
3,307,176	-				+0.4
3,307,176	-				+0.4
3,307,176	-				-0.6
3,307,176	-				+1.3
3,307,176	-				+1.3
3,307,176	-				+0.4
3,307,176	-				+2.2
3,307,176	-				-1.8
3,307,176	-				-0.1
3,307,176	-				+1.6
3,307,178	+				-2.8
3,307,178	+				-1.1
3,307,178	+				-0.7
3,307,179	-				-0.8
3,307,179	-				+0.3
3,307,179	-				-1.3
3,307,179	-				+0.7
3,307,201	-				+1.8
3,307,230	+				-0.3
3,307,230	+				-1.0
3,307,230	+				-0.7
3,307,230	+				+1.7
3,307,230	+				+0.6
3,307,230	+				-1.4
3,307,230	+				-0.0
3,307,230	+				-0.0
3,307,230	+				+1.0
3,307,230	+				-1.1
3,307,231	-				+1.1
3,307,231	-				-0.1
3,307,231	-				+2.7
3,307,231	-				+0.2
3,307,231	-				-0.6
3,307,233	+				+0.9
3,307,233	+				+0.4
3,307,234	-				+0.3
3,307,234	-				+0.9
3,307,234	-				+1.5
3,307,351	-		IAI47_15685	0.20	+0.8
3,307,465	+		IAI47_15685	0.37	+0.3
3,307,465	+		IAI47_15685	0.37	+1.5
3,307,465	+		IAI47_15685	0.37	-0.0
3,307,465	+		IAI47_15685	0.37	+4.2
3,307,465	+		IAI47_15685	0.37	+0.4
3,307,466	-		IAI47_15685	0.38	-2.4
3,307,466	-		IAI47_15685	0.38	+1.0
3,307,466	-		IAI47_15685	0.38	+1.7
3,307,466	-		IAI47_15685	0.38	+0.1
3,307,466	-		IAI47_15685	0.38	-0.0
3,307,466	-		IAI47_15685	0.38	+0.6
3,307,470	+		IAI47_15685	0.38	-0.4
3,307,471	-		IAI47_15685	0.38	-0.0
3,307,562	+		IAI47_15685	0.52	-1.6
3,307,600	+		IAI47_15685	0.58	+0.6
3,307,600	+		IAI47_15685	0.58	+0.2
3,307,601	-		IAI47_15685	0.58	-1.1
3,307,608	+		IAI47_15685	0.59	-0.7
3,307,608	+		IAI47_15685	0.59	-0.7
3,307,608	+		IAI47_15685	0.59	+1.6
3,307,608	+		IAI47_15685	0.59	-2.2
3,307,608	+		IAI47_15685	0.59	-0.8
3,307,609	-		IAI47_15685	0.59	+0.7
3,307,609	-		IAI47_15685	0.59	-0.1
3,307,609	-		IAI47_15685	0.59	-0.3
3,307,609	-		IAI47_15685	0.59	-2.1
3,307,609	-		IAI47_15685	0.59	-0.6
3,307,609	-		IAI47_15685	0.59	-0.3
3,307,609	-		IAI47_15685	0.59	+0.1
3,307,671	+		IAI47_15685	0.69	-0.6
3,307,672	-		IAI47_15685	0.69	-2.1
3,307,684	+		IAI47_15685	0.71	+1.3
3,307,684	+		IAI47_15685	0.71	+2.5
3,307,684	+		IAI47_15685	0.71	+0.3
3,307,684	+		IAI47_15685	0.71	+0.3
3,307,684	+		IAI47_15685	0.71	+0.8
3,307,684	+		IAI47_15685	0.71	+0.1
3,307,684	+		IAI47_15685	0.71	-0.6
3,307,684	+		IAI47_15685	0.71	+1.1
3,307,684	+		IAI47_15685	0.71	-0.9
3,307,685	-		IAI47_15685	0.71	-2.0
3,307,685	-		IAI47_15685	0.71	-1.2
3,307,685	-		IAI47_15685	0.71	-2.3
3,307,759	+		IAI47_15685	0.82	+1.2
3,307,759	+		IAI47_15685	0.82	+0.6
3,307,759	+		IAI47_15685	0.82	-0.3
3,307,791	+		IAI47_15685	0.87	-0.2
3,307,791	+		IAI47_15685	0.87	+1.7
3,307,791	+		IAI47_15685	0.87	+1.2
3,307,791	+		IAI47_15685	0.87	+0.9
3,307,791	+		IAI47_15685	0.87	+0.5
3,307,791	+		IAI47_15685	0.87	-0.9
3,307,792	-		IAI47_15685	0.87	-0.5
3,307,792	-		IAI47_15685	0.87	+0.7
3,307,792	-		IAI47_15685	0.87	+0.8
3,307,792	-		IAI47_15685	0.87	-0.2
3,307,837	-				-0.0
3,307,837	-				+0.4
3,307,837	-				+2.6
3,307,837	-				+1.4
3,307,837	-				+0.1
3,307,848	+				+0.9
3,307,889	+				+0.2
3,307,890	-				+0.8
3,307,901	+				+1.2
3,307,901	+				+0.9
3,307,902	-				+0.5
3,307,902	-				-2.1
3,307,902	-				-1.8
3,307,902	-				+0.2
3,307,902	-				-1.5
3,307,906	+				+1.6
3,307,907	-				+0.3
3,307,907	-				-0.2
3,307,915	+				-0.8
3,307,986	+				+2.5
3,307,986	+				+2.1
3,307,987	-				+1.3
3,307,987	-				+2.1
3,307,988	+				+2.2
3,307,988	+				+0.3
3,307,989	-				+0.8
3,308,004	-				+2.2
3,308,015	+		IAI47_15690	0.11	+3.0
3,308,016	-		IAI47_15690	0.11	+1.8
3,308,016	-		IAI47_15690	0.11	+2.7
3,308,066	+		IAI47_15690	0.20	+2.3
3,308,067	-		IAI47_15690	0.20	+2.2
3,308,067	-		IAI47_15690	0.20	+0.3
3,308,067	-		IAI47_15690	0.20	+1.4
3,308,067	-		IAI47_15690	0.20	+2.3
3,308,067	-		IAI47_15690	0.20	+1.4
3,308,077	+		IAI47_15690	0.22	+2.0
3,308,078	-		IAI47_15690	0.23	+2.5
3,308,078	-		IAI47_15690	0.23	+2.1
3,308,078	-		IAI47_15690	0.23	+2.6
3,308,078	-		IAI47_15690	0.23	+3.1
3,308,116	-		IAI47_15690	0.30	+1.5
3,308,116	-		IAI47_15690	0.30	+0.9
3,308,162	-		IAI47_15690	0.38	+2.6
3,308,162	-		IAI47_15690	0.38	+1.9
3,308,193	+		IAI47_15690	0.44	-0.0
3,308,194	-		IAI47_15690	0.44	-2.2
3,308,194	-		IAI47_15690	0.44	+2.9
3,308,194	-		IAI47_15690	0.44	+2.4
3,308,285	+		IAI47_15690	0.61	+2.0
3,308,301	+		IAI47_15690	0.64	+4.0
3,308,377	+		IAI47_15690	0.78	-1.5
3,308,388	+		IAI47_15690	0.80	+2.4
3,308,389	-		IAI47_15690	0.80	+1.5
3,308,389	-		IAI47_15690	0.80	+1.2
3,308,474	-				+2.0
3,308,509	+				+0.3
3,308,593	+				+0.3
3,308,593	+				-0.1
3,308,598	+				-1.0
3,308,599	-				+2.1
3,308,629	+				+0.4
3,308,630	-				+0.5
3,308,630	-				-0.8
3,308,630	-				+0.3
3,308,634	+				-2.4
3,308,634	+				+0.8
3,308,634	+				-0.9
3,308,635	-				-0.6
3,308,635	-				-1.9
3,308,635	-				+1.7
3,308,635	-				+0.1
3,308,635	-				+1.9
3,308,651	+				-0.3
3,308,652	-				-1.5
3,308,674	+				+1.6
3,308,674	+				-1.3
3,308,696	+				+1.3
3,308,696	+				-2.0
3,308,701	+				+0.5
3,308,701	+				+0.0
3,308,701	+				+0.4
3,308,702	-				+0.4
3,308,702	-				+2.7
3,308,702	-				-1.1
3,308,737	+				-0.9
3,308,737	+				+0.5
3,308,737	+				-1.9
3,308,738	-				+1.0
3,308,738	-				-1.8
3,308,758	-				-1.6
3,308,800	+				-1.6
3,308,800	+				+0.6
3,308,800	+				-0.9
3,308,800	+				-0.7
3,308,800	+				+4.0
3,308,800	+				-1.0
3,308,800	+				-1.1
3,308,800	+				-1.0
3,308,800	+				-0.7
3,308,800	+				-0.0
3,308,800	+				+0.3
3,308,800	+				+2.5
3,308,801	-				+0.5
3,308,801	-				+0.6
3,308,801	-				+0.9
3,308,801	-				+1.5
3,308,801	-				+1.7
3,308,801	-				-0.7
3,308,801	-				-0.6
3,308,806	+				+1.1
3,308,806	+				+0.6
3,308,806	+				-0.9
3,308,806	+				-2.9
3,308,806	+				+0.6
3,308,806	+				-2.3
3,308,807	-				+1.1
3,308,807	-				+1.7
3,308,807	-				-0.2
3,308,905	+		IAI47_15695	0.14	-0.9
3,308,906	-		IAI47_15695	0.14	+1.9
3,308,967	+		IAI47_15695	0.19	+0.6
3,308,968	-		IAI47_15695	0.19	-1.6
3,308,968	-		IAI47_15695	0.19	+0.0
3,308,977	-		IAI47_15695	0.19	-0.2
3,308,977	-		IAI47_15695	0.19	-0.1
3,308,977	-		IAI47_15695	0.19	-3.3
3,309,010	+		IAI47_15695	0.22	-0.2
3,309,121	+		IAI47_15695	0.31	-2.0
3,309,121	+		IAI47_15695	0.31	-0.8
3,309,122	-		IAI47_15695	0.31	-0.6
3,309,122	-		IAI47_15695	0.31	-0.4
3,309,195	+		IAI47_15695	0.36	+0.8
3,309,196	-		IAI47_15695	0.36	+1.0
3,309,196	-		IAI47_15695	0.36	-2.3
3,309,304	-		IAI47_15695	0.45	+1.4
3,309,322	-		IAI47_15695	0.46	+1.0
3,309,428	+		IAI47_15695	0.55	-0.7
3,309,429	-		IAI47_15695	0.55	+1.7
3,309,429	-		IAI47_15695	0.55	-1.0
3,309,437	-		IAI47_15695	0.55	+0.5
3,309,451	+		IAI47_15695	0.56	+1.1
3,309,451	+		IAI47_15695	0.56	-0.9
3,309,451	+		IAI47_15695	0.56	-0.6
3,309,451	+		IAI47_15695	0.56	+0.8
3,309,451	+		IAI47_15695	0.56	+0.5
3,309,451	+		IAI47_15695	0.56	+0.1
3,309,451	+		IAI47_15695	0.56	+0.9
3,309,451	+		IAI47_15695	0.56	+0.2
3,309,451	+		IAI47_15695	0.56	+0.1
3,309,451	+		IAI47_15695	0.56	+0.8
3,309,452	-		IAI47_15695	0.56	+0.5
3,309,452	-		IAI47_15695	0.56	+0.4
3,309,452	-		IAI47_15695	0.56	+0.8
3,309,452	-		IAI47_15695	0.56	-0.4
3,309,452	-		IAI47_15695	0.56	-1.9
3,309,452	-		IAI47_15695	0.56	+0.0
3,309,452	-		IAI47_15695	0.56	-0.0
3,309,452	-		IAI47_15695	0.56	+0.7
3,309,452	-		IAI47_15695	0.56	-1.6
3,309,455	+		IAI47_15695	0.57	-2.1
3,309,455	+		IAI47_15695	0.57	+0.7
3,309,455	+		IAI47_15695	0.57	+0.0
3,309,455	+		IAI47_15695	0.57	+1.4
3,309,455	+		IAI47_15695	0.57	-0.8
3,309,455	+		IAI47_15695	0.57	-1.9
3,309,455	+		IAI47_15695	0.57	-0.1
3,309,456	-		IAI47_15695	0.57	+1.7
3,309,456	-		IAI47_15695	0.57	+2.2
3,309,474	+		IAI47_15695	0.58	-0.1
3,309,474	+		IAI47_15695	0.58	+0.1
3,309,474	+		IAI47_15695	0.58	-1.5
3,309,474	+		IAI47_15695	0.58	+0.8