Strain Fitness in Pantoea sp. MT58 around IAI47_13490

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,860,268	+		IAI47_13475	0.48	-1.1
2,860,343	-		IAI47_13475	0.65	-1.8
2,860,370	+		IAI47_13475	0.71	+0.3
2,860,371	-		IAI47_13475	0.71	-1.4
2,860,450	+		IAI47_13475	0.88	-0.4
2,860,463	+				+0.6
2,860,653	+		IAI47_13480	0.61	-1.4
2,860,653	+		IAI47_13480	0.61	+0.0
2,860,654	-		IAI47_13480	0.61	-0.5
2,860,654	-		IAI47_13480	0.61	+0.1
2,860,743	+				-0.4
2,860,743	+				+2.6
2,860,743	+				-0.7
2,860,743	+				-2.7
2,860,743	+				-0.2
2,860,743	+				+0.6
2,860,744	-				-1.5
2,860,744	-				+0.1
2,860,744	-				+0.2
2,860,744	-				-0.5
2,860,744	-				-2.0
2,860,744	-				-0.4
2,860,819	+		IAI47_13485	0.16	-3.9
2,860,819	+		IAI47_13485	0.16	-0.7
2,860,820	-		IAI47_13485	0.16	+0.2
2,860,829	+		IAI47_13485	0.18	-1.2
2,860,829	+		IAI47_13485	0.18	+1.1
2,860,848	+		IAI47_13485	0.22	+0.5
2,860,848	+		IAI47_13485	0.22	-1.2
2,860,848	+		IAI47_13485	0.22	-0.7
2,860,848	+		IAI47_13485	0.22	+0.6
2,860,849	-		IAI47_13485	0.22	+0.6
2,860,849	-		IAI47_13485	0.22	-2.3
2,860,849	-		IAI47_13485	0.22	-2.2
2,860,849	-		IAI47_13485	0.22	+0.7
2,860,849	-		IAI47_13485	0.22	-1.9
2,860,849	-		IAI47_13485	0.22	-1.1
2,860,849	-		IAI47_13485	0.22	-0.7
2,860,930	+		IAI47_13485	0.39	+1.8
2,860,931	-		IAI47_13485	0.39	+0.8
2,860,946	-		IAI47_13485	0.42	+0.8
2,861,095	+		IAI47_13485	0.73	-1.7
2,861,095	+		IAI47_13485	0.73	+0.4
2,861,095	+		IAI47_13485	0.73	-0.5
2,861,096	-		IAI47_13485	0.73	-1.7
2,861,227	+				-2.9
2,861,227	+				+0.9
2,861,227	+				-0.6
2,861,227	+				-0.2
2,861,227	+				-1.1
2,861,227	+				-1.7
2,861,227	+				-0.4
2,861,227	+				-1.5
2,861,227	+				+0.2
2,861,227	+				-2.3
2,861,227	+				-0.9
2,861,227	+				+0.9
2,861,227	+				-1.8
2,861,227	+				+0.9
2,861,227	+				+1.2
2,861,227	+				-1.7
2,861,228	-				+1.7
2,861,228	-				-0.3
2,861,228	-				+0.6
2,861,228	-				-2.7
2,861,228	-				+0.6
2,861,228	-				+0.4
2,861,228	-				-3.3
2,861,228	-				+0.3
2,861,228	-				-1.0
2,861,228	-				-0.2
2,861,228	-				+0.6
2,861,228	-				-0.7
2,861,231	+				+1.1
2,861,231	+				-2.8
2,861,231	+				-0.4
2,861,232	-				-0.4
2,861,232	-				+0.0
2,861,232	-				-0.4
2,861,232	-				+0.3
2,861,232	-				-2.1
2,861,232	-				-1.9
2,861,232	-				+1.4
2,861,240	+				+0.0
2,861,268	+				-0.4
2,861,269	-				+0.3
2,861,304	+		IAI47_13490	0.13	+0.6
2,861,304	+		IAI47_13490	0.13	+1.6
2,861,305	-		IAI47_13490	0.13	-0.5
2,861,305	-		IAI47_13490	0.13	-2.1
2,861,323	-		IAI47_13490	0.16	-0.3
2,861,359	-		IAI47_13490	0.23	-1.0
2,861,423	+		IAI47_13490	0.36	-2.6
2,861,423	+		IAI47_13490	0.36	-0.3
2,861,423	+		IAI47_13490	0.36	-2.6
2,861,423	+		IAI47_13490	0.36	-0.9
2,861,423	+		IAI47_13490	0.36	-1.1
2,861,423	+		IAI47_13490	0.36	-2.9
2,861,423	+		IAI47_13490	0.36	+0.3
2,861,424	-		IAI47_13490	0.36	+0.6
2,861,511	+		IAI47_13490	0.53	-1.7
2,861,529	+		IAI47_13490	0.56	-1.0
2,861,530	-		IAI47_13490	0.56	-2.0
2,861,530	-		IAI47_13490	0.56	-0.6
2,861,532	+		IAI47_13490	0.57	-1.6
2,861,532	+		IAI47_13490	0.57	-0.4
2,861,532	+		IAI47_13490	0.57	-1.0
2,861,532	+		IAI47_13490	0.57	-1.3
2,861,533	-		IAI47_13490	0.57	-0.4
2,861,533	-		IAI47_13490	0.57	+0.0
2,861,545	+		IAI47_13490	0.59	-1.0
2,861,545	+		IAI47_13490	0.59	+1.0
2,861,545	+		IAI47_13490	0.59	+0.7
2,861,545	+		IAI47_13490	0.59	-0.0
2,861,545	+		IAI47_13490	0.59	-1.0
2,861,545	+		IAI47_13490	0.59	-1.5
2,861,545	+		IAI47_13490	0.59	-1.3
2,861,545	+		IAI47_13490	0.59	-0.2
2,861,545	+		IAI47_13490	0.59	+0.3
2,861,546	-		IAI47_13490	0.59	-1.4
2,861,546	-		IAI47_13490	0.59	-1.2
2,861,546	-		IAI47_13490	0.59	+0.2
2,861,546	-		IAI47_13490	0.59	-0.6
2,861,546	-		IAI47_13490	0.59	-0.2
2,861,546	-		IAI47_13490	0.59	+0.1
2,861,546	-		IAI47_13490	0.59	-1.6
2,861,546	-		IAI47_13490	0.59	+0.7
2,861,546	-		IAI47_13490	0.59	+1.2
2,861,546	-		IAI47_13490	0.59	-3.0
2,861,596	-		IAI47_13490	0.69	-1.2
2,861,599	-		IAI47_13490	0.70	+1.2
2,861,599	-		IAI47_13490	0.70	-1.6
2,861,660	+		IAI47_13490	0.82	-1.6
2,861,660	+		IAI47_13490	0.82	+0.0
2,861,661	-		IAI47_13490	0.82	+0.9
2,861,661	-		IAI47_13490	0.82	+0.4
2,861,674	-		IAI47_13490	0.84	+0.0
2,861,674	-		IAI47_13490	0.84	-0.7
2,861,749	-				-1.0
2,861,754	+				-0.8
2,861,754	+				+0.1
2,861,754	+				+0.1
2,861,754	+				+1.2
2,861,755	-				-1.4
2,861,755	-				+0.9
2,861,755	-				+0.0
2,861,755	-				+0.2
2,861,771	-				-1.2
2,861,782	+				-0.3
2,861,782	+				-0.3
2,861,782	+				-1.1
2,861,783	-				-2.2
2,861,783	-				-1.3
2,861,783	-				-2.1
2,861,783	-				-2.1
2,861,783	-				-0.4
2,861,783	-				+0.5
2,861,783	-				-1.1
2,861,951	+		IAI47_13495	0.18	-3.6
2,861,952	-		IAI47_13495	0.19	+1.1
2,862,005	-		IAI47_13495	0.24	-1.9
2,862,005	-		IAI47_13495	0.24	+0.5
2,862,005	-		IAI47_13495	0.24	-2.9
2,862,035	-		IAI47_13495	0.27	+0.6
2,862,035	-		IAI47_13495	0.27	-2.2
2,862,046	+		IAI47_13495	0.28	-1.7
2,862,046	+		IAI47_13495	0.28	-1.4
2,862,047	-		IAI47_13495	0.28	-1.2
2,862,273	-		IAI47_13495	0.51	-2.9
2,862,273	-		IAI47_13495	0.51	+0.0
2,862,273	-		IAI47_13495	0.51	+1.7
2,862,341	+		IAI47_13495	0.58	+0.1
2,862,356	+		IAI47_13495	0.59	+0.2
2,862,356	+		IAI47_13495	0.59	+0.1
2,862,356	+		IAI47_13495	0.59	-2.1
2,862,357	-		IAI47_13495	0.60	+0.4
2,862,398	+		IAI47_13495	0.64	+0.2
2,862,398	+		IAI47_13495	0.64	-3.4
2,862,398	+		IAI47_13495	0.64	-0.6
2,862,399	-		IAI47_13495	0.64	-1.0
2,862,409	-		IAI47_13495	0.65	-0.5
2,862,482	+		IAI47_13495	0.72	-2.9
2,862,483	-		IAI47_13495	0.72	-2.6
2,862,652	+		IAI47_13495	0.89	+0.0
2,862,652	+		IAI47_13495	0.89	-0.1
2,862,653	-		IAI47_13495	0.90	+0.6
2,862,670	+				-2.3
2,862,670	+				-0.5
2,862,670	+				+0.5
2,862,670	+				+1.0
2,862,670	+				-1.0
2,862,670	+				-0.2
2,862,670	+				+0.3
2,862,671	-				-1.6
2,862,671	-				-2.8
2,862,671	-				+0.0
2,862,671	-				-0.3
2,862,671	-				-0.8
2,862,674	+				+1.6
2,862,674	+				+1.0
2,862,674	+				-2.4
2,862,675	-				-1.7
2,862,675	-				+1.0
2,862,686	+				-1.9
2,862,686	+				+0.2
2,862,687	-				+0.9
2,862,716	-				-1.4
2,862,716	-				+0.1
2,862,718	+				+0.6
2,862,718	+				+0.0
2,862,718	+				-0.5
2,862,719	-				+1.2
2,862,725	+				-1.2
2,862,725	+				+0.8
2,862,733	+				-0.1
2,862,733	+				-1.4
2,862,734	-				-0.2
2,862,734	-				-1.7