Strain Fitness in Pantoea sp. MT58 around IAI47_13100

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,767,219	+				-1.0
2,767,219	+				+0.3
2,767,311	-				+0.4
2,767,325	+				+1.2
2,767,325	+				+0.6
2,767,326	-				+2.1
2,767,332	+				+0.6
2,767,373	+				+0.4
2,767,373	+				+0.2
2,767,373	+				-2.0
2,767,374	-				+2.1
2,767,442	+		IAI47_13095	0.12	+1.0
2,767,442	+		IAI47_13095	0.12	+2.5
2,767,490	+		IAI47_13095	0.19	+1.2
2,767,490	+		IAI47_13095	0.19	+2.7
2,767,491	-		IAI47_13095	0.19	+0.5
2,767,491	-		IAI47_13095	0.19	-0.4
2,767,501	+		IAI47_13095	0.21	+2.3
2,767,501	+		IAI47_13095	0.21	+0.8
2,767,501	+		IAI47_13095	0.21	+0.2
2,767,502	-		IAI47_13095	0.21	-2.8
2,767,502	-		IAI47_13095	0.21	-0.1
2,767,502	-		IAI47_13095	0.21	-0.6
2,767,502	-		IAI47_13095	0.21	+0.9
2,767,502	-		IAI47_13095	0.21	-0.7
2,767,502	-		IAI47_13095	0.21	-0.4
2,767,502	-		IAI47_13095	0.21	-0.4
2,767,504	+		IAI47_13095	0.21	+1.2
2,767,504	+		IAI47_13095	0.21	-0.7
2,767,504	+		IAI47_13095	0.21	-1.4
2,767,504	+		IAI47_13095	0.21	-1.2
2,767,505	-		IAI47_13095	0.21	-0.5
2,767,505	-		IAI47_13095	0.21	-1.6
2,767,505	-		IAI47_13095	0.21	-0.7
2,767,505	-		IAI47_13095	0.21	+1.3
2,767,505	-		IAI47_13095	0.21	+2.2
2,767,531	+		IAI47_13095	0.25	-2.5
2,767,531	+		IAI47_13095	0.25	-0.0
2,767,531	+		IAI47_13095	0.25	+0.6
2,767,531	+		IAI47_13095	0.25	-1.6
2,767,532	-		IAI47_13095	0.25	-1.4
2,767,532	-		IAI47_13095	0.25	-0.1
2,767,532	-		IAI47_13095	0.25	+0.4
2,767,532	-		IAI47_13095	0.25	-2.6
2,767,533	+		IAI47_13095	0.25	+0.6
2,767,533	+		IAI47_13095	0.25	+0.6
2,767,533	+		IAI47_13095	0.25	-3.1
2,767,533	+		IAI47_13095	0.25	-1.1
2,767,534	-		IAI47_13095	0.26	-0.3
2,767,534	-		IAI47_13095	0.26	-0.2
2,767,535	-		IAI47_13095	0.26	+2.6
2,767,539	+		IAI47_13095	0.26	-2.4
2,767,539	+		IAI47_13095	0.26	+1.8
2,767,539	+		IAI47_13095	0.26	-1.7
2,767,539	+		IAI47_13095	0.26	+1.0
2,767,539	+		IAI47_13095	0.26	-1.4
2,767,540	-		IAI47_13095	0.26	+0.8
2,767,540	-		IAI47_13095	0.26	+0.8
2,767,540	-		IAI47_13095	0.26	+1.0
2,767,540	-		IAI47_13095	0.26	-1.0
2,767,540	-		IAI47_13095	0.26	+1.8
2,767,540	-		IAI47_13095	0.26	+1.8
2,767,631	-		IAI47_13095	0.40	+0.8
2,767,631	-		IAI47_13095	0.40	+0.7
2,767,631	-		IAI47_13095	0.40	-0.4
2,767,786	+		IAI47_13095	0.64	+1.3
2,767,786	+		IAI47_13095	0.64	-0.0
2,767,786	+		IAI47_13095	0.64	+1.2
2,767,801	+		IAI47_13095	0.66	-0.2
2,767,802	-		IAI47_13095	0.66	-0.5
2,767,802	-		IAI47_13095	0.66	-0.4
2,767,816	+		IAI47_13095	0.68	+0.7
2,767,816	+		IAI47_13095	0.68	-0.5
2,767,816	+		IAI47_13095	0.68	-1.4
2,767,816	+		IAI47_13095	0.68	+0.8
2,767,816	+		IAI47_13095	0.68	+1.6
2,767,817	-		IAI47_13095	0.69	+1.6
2,767,817	-		IAI47_13095	0.69	+0.5
2,767,817	-		IAI47_13095	0.69	+0.8
2,767,817	-		IAI47_13095	0.69	-3.0
2,767,817	-		IAI47_13095	0.69	-1.1
2,767,818	+		IAI47_13095	0.69	-0.6
2,767,818	+		IAI47_13095	0.69	-0.6
2,767,818	+		IAI47_13095	0.69	+0.9
2,767,818	+		IAI47_13095	0.69	-0.9
2,767,818	+		IAI47_13095	0.69	-0.3
2,767,894	+		IAI47_13095	0.80	+0.4
2,767,894	+		IAI47_13095	0.80	+1.1
2,767,894	+		IAI47_13095	0.80	+0.9
2,767,895	-		IAI47_13095	0.81	-0.9
2,767,895	-		IAI47_13095	0.81	-0.1
2,767,895	-		IAI47_13095	0.81	-1.4
2,767,895	-		IAI47_13095	0.81	-0.6
2,767,970	+				+1.0
2,768,005	+				-0.3
2,768,005	+				-0.6
2,768,006	-				-0.9
2,768,006	-				-1.7
2,768,047	-				-3.1
2,768,047	-				+0.9
2,768,095	+				-0.6
2,768,095	+				-0.2
2,768,095	+				-0.6
2,768,095	+				-0.9
2,768,096	-				+0.2
2,768,096	-				-0.6
2,768,137	+				-0.6
2,768,137	+				+0.4
2,768,162	+				-0.3
2,768,191	+				-2.5
2,768,191	+				+1.8
2,768,237	+				+1.2
2,768,237	+				+2.8
2,768,237	+				+1.6
2,768,237	+				+1.1
2,768,237	+				-1.1
2,768,237	+				+0.1
2,768,238	-				+0.1
2,768,238	-				-1.3
2,768,238	-				-1.2
2,768,238	-				+0.1
2,768,238	-				+0.5
2,768,238	-				-0.8
2,768,238	-				+0.1
2,768,238	-				-0.1
2,768,238	-				+0.3
2,768,238	-				-2.5
2,768,238	-				-1.0
2,768,238	-				-2.1
2,768,238	-				-0.4
2,768,238	-				-0.8
2,768,238	-				+1.4
2,768,243	+				+0.7
2,768,244	-				-1.7
2,768,244	-				+0.3
2,768,244	-				-2.4
2,768,328	+		IAI47_13100	0.14	+0.6
2,768,328	+		IAI47_13100	0.14	-1.2
2,768,331	+		IAI47_13100	0.15	+0.1
2,768,331	+		IAI47_13100	0.15	+2.6
2,768,331	+		IAI47_13100	0.15	+1.2
2,768,331	+		IAI47_13100	0.15	-2.2
2,768,332	-		IAI47_13100	0.15	-1.5
2,768,332	-		IAI47_13100	0.15	+1.2
2,768,332	-		IAI47_13100	0.15	-2.4
2,768,374	+		IAI47_13100	0.18	-2.4
2,768,409	+		IAI47_13100	0.21	-0.4
2,768,409	+		IAI47_13100	0.21	+1.2
2,768,409	+		IAI47_13100	0.21	-1.7
2,768,411	+		IAI47_13100	0.22	+0.1
2,768,453	+		IAI47_13100	0.25	+1.4
2,768,453	+		IAI47_13100	0.25	-0.6
2,768,516	+		IAI47_13100	0.31	-0.2
2,768,516	+		IAI47_13100	0.31	+0.7
2,768,516	+		IAI47_13100	0.31	-0.6
2,768,516	+		IAI47_13100	0.31	+1.9
2,768,517	-		IAI47_13100	0.31	-0.1
2,768,517	-		IAI47_13100	0.31	-0.0
2,768,517	-		IAI47_13100	0.31	+1.2
2,768,517	-		IAI47_13100	0.31	+0.9
2,768,517	-		IAI47_13100	0.31	+2.0
2,768,517	-		IAI47_13100	0.31	+0.2
2,768,517	-		IAI47_13100	0.31	+1.4
2,768,517	-		IAI47_13100	0.31	+1.1
2,768,528	+		IAI47_13100	0.32	+1.0
2,768,529	-		IAI47_13100	0.32	-1.2
2,768,549	+		IAI47_13100	0.34	+0.3
2,768,549	+		IAI47_13100	0.34	+0.6
2,768,571	+		IAI47_13100	0.35	-0.4
2,768,571	+		IAI47_13100	0.35	+0.3
2,768,571	+		IAI47_13100	0.35	-1.7
2,768,571	+		IAI47_13100	0.35	+4.4
2,768,572	-		IAI47_13100	0.36	-0.0
2,768,614	+		IAI47_13100	0.39	-0.4
2,768,614	+		IAI47_13100	0.39	+1.0
2,768,656	-		IAI47_13100	0.43	-0.3
2,768,666	+		IAI47_13100	0.44	-1.4
2,768,666	+		IAI47_13100	0.44	-1.0
2,768,666	+		IAI47_13100	0.44	-0.6
2,768,666	+		IAI47_13100	0.44	-0.4
2,768,667	-		IAI47_13100	0.44	+1.6
2,768,667	-		IAI47_13100	0.44	+0.6
2,768,667	-		IAI47_13100	0.44	+1.0
2,768,766	+		IAI47_13100	0.52	-1.4
2,768,822	+		IAI47_13100	0.57	-1.3
2,768,822	+		IAI47_13100	0.57	+1.6
2,768,822	+		IAI47_13100	0.57	+1.1
2,768,823	-		IAI47_13100	0.57	+0.8
2,768,823	-		IAI47_13100	0.57	+1.0
2,768,922	+		IAI47_13100	0.66	-1.0
2,768,923	-		IAI47_13100	0.66	+1.6
2,768,950	+		IAI47_13100	0.68	-0.3
2,768,987	+		IAI47_13100	0.72	-1.2
2,769,135	+		IAI47_13100	0.84	-1.0
2,769,136	-		IAI47_13100	0.84	+1.1
2,769,136	-		IAI47_13100	0.84	-2.1
2,769,201	+				-0.1
2,769,202	-				-3.1
2,769,202	-				+1.2
2,769,208	+				-1.7
2,769,208	+				+0.4
2,769,208	+				-0.3
2,769,209	-				+0.8
2,769,211	+				-1.2
2,769,211	+				+0.2
2,769,211	+				+1.8
2,769,211	+				+1.1
2,769,212	-				-2.1
2,769,212	-				-2.0
2,769,212	-				-2.2
2,769,212	-				+0.3
2,769,212	-				+1.2
2,769,212	-				-2.2
2,769,275	-				+1.2
2,769,283	-				+0.3
2,769,315	+				-1.2
2,769,315	+				+0.3
2,769,315	+				+0.6
2,769,315	+				-0.3
2,769,315	+				+0.6
2,769,315	+				-2.0
2,769,315	+				+1.6
2,769,315	+				-1.5
2,769,315	+				+0.1
2,769,315	+				+0.3
2,769,316	-				-0.9
2,769,316	-				-0.2
2,769,316	-				+1.4
2,769,316	-				+0.3
2,769,345	+				+0.6
2,769,345	+				-1.9
2,769,346	-				-1.1
2,769,346	-				+0.7
2,769,351	+				+0.2
2,769,352	-				-1.1
2,769,352	-				-0.9
2,769,393	+				+0.6
2,769,394	-				-0.1
2,769,394	-				+0.6
2,769,435	+				-0.6
2,769,436	-				+0.2
2,769,449	-				-0.7
2,770,086	+				-0.4
2,770,087	-				-0.3
2,770,087	-				-0.7
2,770,161	+				+1.6
2,770,256	+				+0.9
2,770,256	+				-1.0