Strain Fitness in Pantoea sp. MT58 around IAI47_06655

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_06650 and IAI47_06655 overlap by 4 nucleotidesIAI47_06655 and IAI47_06660 are separated by 16 nucleotides IAI47_06650: IAI47_06650 - fused PTS fructose transporter subunit IIA/HPr protein, at 1,384,760 to 1,385,890 _06650 IAI47_06655: IAI47_06655 - 1-phosphofructokinase, at 1,385,887 to 1,386,825 _06655 IAI47_06660: IAI47_06660 - PTS fructose transporter subunit IIBC, at 1,386,842 to 1,388,554 _06660 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1384.957 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.039 kb on + strand, within IAI47_06650at 1385.040 kb on - strand, within IAI47_06650at 1385.040 kb on - strand, within IAI47_06650at 1385.040 kb on - strand, within IAI47_06650at 1385.040 kb on - strand, within IAI47_06650at 1385.040 kb on - strand, within IAI47_06650at 1385.040 kb on - strand, within IAI47_06650at 1385.085 kb on + strand, within IAI47_06650at 1385.086 kb on - strand, within IAI47_06650at 1385.217 kb on + strand, within IAI47_06650at 1385.217 kb on + strand, within IAI47_06650at 1385.217 kb on + strand, within IAI47_06650at 1385.218 kb on - strand, within IAI47_06650at 1385.221 kb on + strand, within IAI47_06650at 1385.221 kb on + strand, within IAI47_06650at 1385.221 kb on + strand, within IAI47_06650at 1385.221 kb on + strand, within IAI47_06650at 1385.222 kb on - strand, within IAI47_06650at 1385.309 kb on + strand, within IAI47_06650at 1385.309 kb on + strand, within IAI47_06650at 1385.309 kb on + strand, within IAI47_06650at 1385.310 kb on - strand, within IAI47_06650at 1385.457 kb on + strand, within IAI47_06650at 1385.457 kb on + strand, within IAI47_06650at 1385.457 kb on + strand, within IAI47_06650at 1385.504 kb on + strand, within IAI47_06650at 1385.504 kb on + strand, within IAI47_06650at 1385.504 kb on + strand, within IAI47_06650at 1385.517 kb on + strand, within IAI47_06650at 1385.517 kb on + strand, within IAI47_06650at 1385.548 kb on + strand, within IAI47_06650at 1385.548 kb on + strand, within IAI47_06650at 1385.570 kb on + strand, within IAI47_06650at 1385.571 kb on - strand, within IAI47_06650at 1385.571 kb on - strand, within IAI47_06650at 1385.630 kb on - strand, within IAI47_06650at 1385.682 kb on + strand, within IAI47_06650at 1385.682 kb on + strand, within IAI47_06650at 1385.683 kb on - strand, within IAI47_06650at 1385.735 kb on - strand, within IAI47_06650at 1385.735 kb on - strand, within IAI47_06650at 1385.926 kb on + strandat 1385.927 kb on - strandat 1385.927 kb on - strandat 1385.927 kb on - strandat 1385.941 kb on + strandat 1385.941 kb on + strandat 1385.941 kb on + strandat 1385.941 kb on + strandat 1385.941 kb on + strandat 1385.942 kb on - strandat 1385.942 kb on - strandat 1385.942 kb on - strandat 1385.944 kb on - strandat 1385.944 kb on - strandat 1386.024 kb on + strand, within IAI47_06655at 1386.024 kb on + strand, within IAI47_06655at 1386.024 kb on + strand, within IAI47_06655at 1386.024 kb on + strand, within IAI47_06655at 1386.159 kb on + strand, within IAI47_06655at 1386.162 kb on + strand, within IAI47_06655at 1386.163 kb on - strand, within IAI47_06655at 1386.250 kb on - strand, within IAI47_06655at 1386.360 kb on + strand, within IAI47_06655at 1386.361 kb on - strand, within IAI47_06655at 1386.606 kb on + strand, within IAI47_06655at 1386.607 kb on - strand, within IAI47_06655at 1386.673 kb on + strand, within IAI47_06655at 1386.774 kb on + strandat 1386.774 kb on + strandat 1386.774 kb on + strandat 1386.775 kb on - strandat 1386.809 kb on + strandat 1386.809 kb on + strandat 1386.809 kb on + strandat 1386.809 kb on + strandat 1386.810 kb on - strandat 1386.810 kb on - strandat 1386.810 kb on - strandat 1386.841 kb on - strandat 1386.841 kb on - strandat 1386.859 kb on + strandat 1386.860 kb on - strandat 1386.868 kb on + strandat 1386.868 kb on + strandat 1386.869 kb on - strandat 1386.869 kb on - strandat 1386.869 kb on - strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.890 kb on + strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.891 kb on - strandat 1386.892 kb on + strandat 1386.892 kb on + strandat 1386.892 kb on + strandat 1386.892 kb on + strandat 1386.892 kb on + strandat 1386.893 kb on - strandat 1386.893 kb on - strandat 1386.893 kb on - strandat 1386.985 kb on + strandat 1387.040 kb on - strand, within IAI47_06660at 1387.097 kb on - strand, within IAI47_06660at 1387.225 kb on + strand, within IAI47_06660at 1387.225 kb on + strand, within IAI47_06660at 1387.226 kb on - strand, within IAI47_06660at 1387.226 kb on - strand, within IAI47_06660at 1387.241 kb on - strand, within IAI47_06660at 1387.241 kb on - strand, within IAI47_06660at 1387.241 kb on - strand, within IAI47_06660at 1387.406 kb on + strand, within IAI47_06660at 1387.406 kb on + strand, within IAI47_06660at 1387.406 kb on + strand, within IAI47_06660at 1387.457 kb on - strand, within IAI47_06660at 1387.481 kb on + strand, within IAI47_06660at 1387.481 kb on + strand, within IAI47_06660at 1387.481 kb on + strand, within IAI47_06660at 1387.482 kb on - strand, within IAI47_06660at 1387.482 kb on - strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.483 kb on + strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.484 kb on - strand, within IAI47_06660at 1387.510 kb on + strand, within IAI47_06660at 1387.510 kb on + strand, within IAI47_06660at 1387.511 kb on - strand, within IAI47_06660at 1387.511 kb on - strand, within IAI47_06660at 1387.511 kb on - strand, within IAI47_06660at 1387.511 kb on - strand, within IAI47_06660at 1387.574 kb on + strand, within IAI47_06660at 1387.574 kb on + strand, within IAI47_06660at 1387.574 kb on + strand, within IAI47_06660at 1387.574 kb on + strand, within IAI47_06660at 1387.575 kb on - strand, within IAI47_06660at 1387.575 kb on - strand, within IAI47_06660at 1387.575 kb on - strand, within IAI47_06660at 1387.575 kb on - strand, within IAI47_06660at 1387.575 kb on - strand, within IAI47_06660at 1387.634 kb on - strand, within IAI47_06660at 1387.634 kb on - strand, within IAI47_06660at 1387.645 kb on + strand, within IAI47_06660at 1387.646 kb on - strand, within IAI47_06660at 1387.714 kb on - strand, within IAI47_06660at 1387.714 kb on - strand, within IAI47_06660at 1387.733 kb on - strand, within IAI47_06660at 1387.733 kb on - strand, within IAI47_06660at 1387.786 kb on + strand, within IAI47_06660at 1387.787 kb on - strand, within IAI47_06660at 1387.818 kb on + strand, within IAI47_06660at 1387.818 kb on + strand, within IAI47_06660at 1387.818 kb on + strand, within IAI47_06660at 1387.825 kb on + strand, within IAI47_06660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
remove
1,384,957 + IAI47_06650 0.17 +0.2
1,385,039 + IAI47_06650 0.25 -0.4
1,385,039 + IAI47_06650 0.25 +1.6
1,385,039 + IAI47_06650 0.25 +2.1
1,385,039 + IAI47_06650 0.25 -1.6
1,385,039 + IAI47_06650 0.25 +1.0
1,385,039 + IAI47_06650 0.25 -0.8
1,385,039 + IAI47_06650 0.25 +2.1
1,385,039 + IAI47_06650 0.25 +2.2
1,385,039 + IAI47_06650 0.25 +0.6
1,385,040 - IAI47_06650 0.25 +2.2
1,385,040 - IAI47_06650 0.25 +0.3
1,385,040 - IAI47_06650 0.25 +1.8
1,385,040 - IAI47_06650 0.25 +3.2
1,385,040 - IAI47_06650 0.25 +2.2
1,385,040 - IAI47_06650 0.25 +0.3
1,385,085 + IAI47_06650 0.29 +0.8
1,385,086 - IAI47_06650 0.29 +2.7
1,385,217 + IAI47_06650 0.40 -2.5
1,385,217 + IAI47_06650 0.40 +1.0
1,385,217 + IAI47_06650 0.40 -0.6
1,385,218 - IAI47_06650 0.40 +1.2
1,385,221 + IAI47_06650 0.41 +0.3
1,385,221 + IAI47_06650 0.41 +1.7
1,385,221 + IAI47_06650 0.41 +0.1
1,385,221 + IAI47_06650 0.41 -1.8
1,385,222 - IAI47_06650 0.41 +2.7
1,385,309 + IAI47_06650 0.49 +1.9
1,385,309 + IAI47_06650 0.49 -0.6
1,385,309 + IAI47_06650 0.49 +1.8
1,385,310 - IAI47_06650 0.49 -0.0
1,385,457 + IAI47_06650 0.62 +0.8
1,385,457 + IAI47_06650 0.62 +0.4
1,385,457 + IAI47_06650 0.62 +1.2
1,385,504 + IAI47_06650 0.66 -2.1
1,385,504 + IAI47_06650 0.66 -0.3
1,385,504 + IAI47_06650 0.66 -0.0
1,385,517 + IAI47_06650 0.67 -1.2
1,385,517 + IAI47_06650 0.67 +0.7
1,385,548 + IAI47_06650 0.70 +0.8
1,385,548 + IAI47_06650 0.70 -0.8
1,385,570 + IAI47_06650 0.72 +2.1
1,385,571 - IAI47_06650 0.72 +2.0
1,385,571 - IAI47_06650 0.72 +1.6
1,385,630 - IAI47_06650 0.77 +1.3
1,385,682 + IAI47_06650 0.82 +0.7
1,385,682 + IAI47_06650 0.82 +2.1
1,385,683 - IAI47_06650 0.82 +0.3
1,385,735 - IAI47_06650 0.86 +1.9
1,385,735 - IAI47_06650 0.86 +3.0
1,385,926 + +1.3
1,385,927 - +1.9
1,385,927 - +0.1
1,385,927 - -0.3
1,385,941 + +2.1
1,385,941 + +0.8
1,385,941 + +3.3
1,385,941 + +1.7
1,385,941 + +1.7
1,385,942 - +2.6
1,385,942 - +1.8
1,385,942 - +1.4
1,385,944 - +4.2
1,385,944 - +2.0
1,386,024 + IAI47_06655 0.15 +1.9
1,386,024 + IAI47_06655 0.15 +0.6
1,386,024 + IAI47_06655 0.15 +2.8
1,386,024 + IAI47_06655 0.15 +1.9
1,386,159 + IAI47_06655 0.29 +2.5
1,386,162 + IAI47_06655 0.29 +1.9
1,386,163 - IAI47_06655 0.29 +0.8
1,386,250 - IAI47_06655 0.39 +1.7
1,386,360 + IAI47_06655 0.50 -0.0
1,386,361 - IAI47_06655 0.50 +2.0
1,386,606 + IAI47_06655 0.77 +1.2
1,386,607 - IAI47_06655 0.77 +3.9
1,386,673 + IAI47_06655 0.84 +1.4
1,386,774 + +2.6
1,386,774 + +1.6
1,386,774 + +0.6
1,386,775 - +1.6
1,386,809 + +0.0
1,386,809 + -2.1
1,386,809 + -1.6
1,386,809 + +0.7
1,386,810 - +1.8
1,386,810 - +0.9
1,386,810 - +0.9
1,386,841 - +0.3
1,386,841 - +0.3
1,386,859 + +1.4
1,386,860 - -1.1
1,386,868 + -1.5
1,386,868 + -0.8
1,386,869 - +2.3
1,386,869 - +0.4
1,386,869 - -0.5
1,386,890 + -1.6
1,386,890 + +1.3
1,386,890 + +0.3
1,386,890 + -1.8
1,386,890 + +0.8
1,386,890 + +0.2
1,386,890 + +0.1
1,386,890 + +0.3
1,386,891 - -2.0
1,386,891 - +0.8
1,386,891 - -1.6
1,386,891 - +2.3
1,386,891 - -1.6
1,386,891 - -0.3
1,386,891 - +0.6
1,386,891 - +1.7
1,386,891 - +0.1
1,386,892 + -1.0
1,386,892 + +1.7
1,386,892 + +0.8
1,386,892 + -2.4
1,386,892 + +0.1
1,386,893 - -0.5
1,386,893 - -2.3
1,386,893 - -0.3
1,386,985 + -0.8
1,387,040 - IAI47_06660 0.12 -1.9
1,387,097 - IAI47_06660 0.15 -1.9
1,387,225 + IAI47_06660 0.22 +1.0
1,387,225 + IAI47_06660 0.22 -1.1
1,387,226 - IAI47_06660 0.22 +1.4
1,387,226 - IAI47_06660 0.22 -1.2
1,387,241 - IAI47_06660 0.23 +0.1
1,387,241 - IAI47_06660 0.23 -0.9
1,387,241 - IAI47_06660 0.23 +0.0
1,387,406 + IAI47_06660 0.33 -0.1
1,387,406 + IAI47_06660 0.33 -1.0
1,387,406 + IAI47_06660 0.33 +0.9
1,387,457 - IAI47_06660 0.36 +0.2
1,387,481 + IAI47_06660 0.37 +0.4
1,387,481 + IAI47_06660 0.37 -3.5
1,387,481 + IAI47_06660 0.37 +1.6
1,387,482 - IAI47_06660 0.37 -0.5
1,387,482 - IAI47_06660 0.37 +0.1
1,387,483 + IAI47_06660 0.37 -0.3
1,387,483 + IAI47_06660 0.37 +2.4
1,387,483 + IAI47_06660 0.37 -0.0
1,387,483 + IAI47_06660 0.37 +0.1
1,387,483 + IAI47_06660 0.37 -0.0
1,387,483 + IAI47_06660 0.37 -1.1
1,387,483 + IAI47_06660 0.37 -0.8
1,387,483 + IAI47_06660 0.37 +1.2
1,387,483 + IAI47_06660 0.37 -0.2
1,387,483 + IAI47_06660 0.37 -0.7
1,387,483 + IAI47_06660 0.37 +1.0
1,387,483 + IAI47_06660 0.37 -0.4
1,387,483 + IAI47_06660 0.37 -2.1
1,387,483 + IAI47_06660 0.37 -1.2
1,387,484 - IAI47_06660 0.37 +0.2
1,387,484 - IAI47_06660 0.37 -1.8
1,387,484 - IAI47_06660 0.37 -1.2
1,387,484 - IAI47_06660 0.37 -0.1
1,387,484 - IAI47_06660 0.37 +0.4
1,387,484 - IAI47_06660 0.37 +0.7
1,387,484 - IAI47_06660 0.37 +1.3
1,387,484 - IAI47_06660 0.37 -0.1
1,387,484 - IAI47_06660 0.37 -2.0
1,387,484 - IAI47_06660 0.37 +0.6
1,387,510 + IAI47_06660 0.39 -2.0
1,387,510 + IAI47_06660 0.39 +3.1
1,387,511 - IAI47_06660 0.39 -1.0
1,387,511 - IAI47_06660 0.39 +1.0
1,387,511 - IAI47_06660 0.39 -1.6
1,387,511 - IAI47_06660 0.39 +0.6
1,387,574 + IAI47_06660 0.43 -0.7
1,387,574 + IAI47_06660 0.43 +1.0
1,387,574 + IAI47_06660 0.43 -2.1
1,387,574 + IAI47_06660 0.43 -2.4
1,387,575 - IAI47_06660 0.43 -0.0
1,387,575 - IAI47_06660 0.43 -0.1
1,387,575 - IAI47_06660 0.43 +2.6
1,387,575 - IAI47_06660 0.43 +0.4
1,387,575 - IAI47_06660 0.43 -0.2
1,387,634 - IAI47_06660 0.46 -1.4
1,387,634 - IAI47_06660 0.46 -1.4
1,387,645 + IAI47_06660 0.47 -0.9
1,387,646 - IAI47_06660 0.47 -1.3
1,387,714 - IAI47_06660 0.51 -2.0
1,387,714 - IAI47_06660 0.51 +0.1
1,387,733 - IAI47_06660 0.52 -1.4
1,387,733 - IAI47_06660 0.52 -2.8
1,387,786 + IAI47_06660 0.55 -2.5
1,387,787 - IAI47_06660 0.55 +1.1
1,387,818 + IAI47_06660 0.57 -1.9
1,387,818 + IAI47_06660 0.57 +0.6
1,387,818 + IAI47_06660 0.57 -0.6
1,387,825 + IAI47_06660 0.57 -2.0

Or see this region's nucleotide sequence