Strain Fitness in Pantoea sp. MT58 around IAI47_06590

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,370,526	-				+1.1
1,370,526	-				+0.1
1,370,530	+				+1.1
1,370,530	+				-0.1
1,370,530	+				+1.9
1,370,530	+				-1.2
1,370,531	-				-0.5
1,370,531	-				-2.2
1,370,556	+				-0.6
1,370,557	-				+1.1
1,370,557	-				-0.4
1,370,570	+				+0.6
1,370,570	+				-1.0
1,370,570	+				-1.1
1,370,570	+				-2.9
1,370,570	+				-1.2
1,370,588	+				+1.2
1,370,589	-				-0.4
1,370,620	+				+1.4
1,370,622	+				-0.4
1,370,622	+				+0.8
1,370,623	-				+0.6
1,370,623	-				+2.0
1,370,623	-				-0.7
1,370,623	-				-1.9
1,370,623	-				-1.4
1,370,623	-				+0.8
1,370,623	-				-1.0
1,370,623	-				-0.5
1,370,623	-				+0.9
1,370,839	+		IAI47_06585	0.20	-0.1
1,370,839	+		IAI47_06585	0.20	-1.0
1,370,840	-		IAI47_06585	0.20	+1.3
1,370,840	-		IAI47_06585	0.20	-2.1
1,370,840	-		IAI47_06585	0.20	-0.5
1,370,853	-		IAI47_06585	0.22	-1.4
1,370,853	-		IAI47_06585	0.22	-0.7
1,370,853	-		IAI47_06585	0.22	+0.9
1,370,883	+		IAI47_06585	0.26	+0.6
1,370,883	+		IAI47_06585	0.26	+1.6
1,370,905	+		IAI47_06585	0.29	-1.1
1,370,906	-		IAI47_06585	0.29	+0.2
1,370,906	-		IAI47_06585	0.29	+0.1
1,370,947	+		IAI47_06585	0.35	+2.1
1,370,947	+		IAI47_06585	0.35	+0.2
1,370,948	-		IAI47_06585	0.35	+2.5
1,370,948	-		IAI47_06585	0.35	+0.9
1,370,948	-		IAI47_06585	0.35	-2.6
1,370,948	-		IAI47_06585	0.35	-0.7
1,370,948	-		IAI47_06585	0.35	+0.2
1,371,057	+		IAI47_06585	0.50	-1.0
1,371,057	+		IAI47_06585	0.50	-2.2
1,371,058	-		IAI47_06585	0.50	-1.2
1,371,088	+		IAI47_06585	0.55	-0.0
1,371,088	+		IAI47_06585	0.55	+1.6
1,371,089	-		IAI47_06585	0.55	-0.9
1,371,089	-		IAI47_06585	0.55	-1.0
1,371,124	-		IAI47_06585	0.60	-1.9
1,371,138	+		IAI47_06585	0.62	+0.6
1,371,138	+		IAI47_06585	0.62	+1.2
1,371,201	+		IAI47_06585	0.70	-0.4
1,371,349	+				+1.3
1,371,349	+				+2.8
1,371,350	-				+0.4
1,371,381	+				-0.4
1,371,381	+				+1.9
1,371,381	+				+0.4
1,371,381	+				-0.7
1,371,516	+				-1.1
1,371,548	+				-0.0
1,371,548	+				-0.7
1,371,548	+				+1.0
1,371,548	+				-2.1
1,371,548	+				+0.4
1,371,548	+				+0.4
1,371,548	+				-1.4
1,371,548	+				-1.7
1,371,548	+				+0.4
1,371,548	+				+0.3
1,371,548	+				+0.7
1,371,548	+				-2.3
1,371,548	+				-0.7
1,371,548	+				+4.4
1,371,548	+				-3.7
1,371,548	+				+0.4
1,371,548	+				+0.7
1,371,549	-				-1.0
1,371,549	-				-1.0
1,371,549	-				-0.5
1,371,549	-				-1.6
1,371,549	-				+1.4
1,371,549	-				+1.7
1,371,549	-				-2.8
1,371,549	-				+1.3
1,371,549	-				+0.4
1,371,549	-				+2.2
1,371,549	-				-1.9
1,371,549	-				-0.5
1,371,549	-				+0.4
1,371,549	-				-1.4
1,371,616	+		IAI47_06590	0.13	+0.2
1,371,617	-		IAI47_06590	0.13	+1.7
1,371,623	+		IAI47_06590	0.13	-0.4
1,371,623	+		IAI47_06590	0.13	+0.3
1,371,623	+		IAI47_06590	0.13	-0.4
1,371,623	+		IAI47_06590	0.13	-1.9
1,371,623	+		IAI47_06590	0.13	-3.0
1,371,624	-		IAI47_06590	0.13	+1.4
1,371,624	-		IAI47_06590	0.13	-1.6
1,371,652	+		IAI47_06590	0.16	+1.3
1,371,652	+		IAI47_06590	0.16	-1.0
1,371,652	+		IAI47_06590	0.16	-0.0
1,371,652	+		IAI47_06590	0.16	+0.6
1,371,652	+		IAI47_06590	0.16	+0.6
1,371,652	+		IAI47_06590	0.16	+2.0
1,371,652	+		IAI47_06590	0.16	-2.0
1,371,652	+		IAI47_06590	0.16	+0.6
1,371,652	+		IAI47_06590	0.16	-1.4
1,371,652	+		IAI47_06590	0.16	+0.1
1,371,653	-		IAI47_06590	0.16	+0.6
1,371,653	-		IAI47_06590	0.16	+1.6
1,371,653	-		IAI47_06590	0.16	+1.4
1,371,653	-		IAI47_06590	0.16	-2.7
1,371,653	-		IAI47_06590	0.16	-0.6
1,371,653	-		IAI47_06590	0.16	+0.1
1,371,653	-		IAI47_06590	0.16	-2.5
1,371,653	-		IAI47_06590	0.16	-1.7
1,371,653	-		IAI47_06590	0.16	+0.7
1,371,653	-		IAI47_06590	0.16	+0.5
1,371,656	+		IAI47_06590	0.16	-0.6
1,371,656	+		IAI47_06590	0.16	+1.0
1,371,656	+		IAI47_06590	0.16	+0.3
1,371,656	+		IAI47_06590	0.16	+1.6
1,371,656	+		IAI47_06590	0.16	+2.3
1,371,656	+		IAI47_06590	0.16	+2.3
1,371,657	-		IAI47_06590	0.16	+1.3
1,371,657	-		IAI47_06590	0.16	+1.2
1,371,657	-		IAI47_06590	0.16	+1.2
1,371,657	-		IAI47_06590	0.16	-3.1
1,371,657	-		IAI47_06590	0.16	+0.2
1,371,657	-		IAI47_06590	0.16	-1.4
1,371,657	-		IAI47_06590	0.16	-0.4
1,371,677	+		IAI47_06590	0.18	+1.2
1,371,677	+		IAI47_06590	0.18	-1.9
1,371,677	+		IAI47_06590	0.18	+3.1
1,371,678	-		IAI47_06590	0.18	+2.5
1,371,678	-		IAI47_06590	0.18	-0.4
1,371,678	-		IAI47_06590	0.18	-0.9
1,371,678	-		IAI47_06590	0.18	-3.4
1,371,685	+		IAI47_06590	0.18	+0.1
1,371,685	+		IAI47_06590	0.18	+1.2
1,371,686	-		IAI47_06590	0.19	+0.7
1,371,686	-		IAI47_06590	0.19	+0.9
1,371,694	-		IAI47_06590	0.19	-0.5
1,371,889	+		IAI47_06590	0.36	-2.3
1,371,889	+		IAI47_06590	0.36	+0.3
1,371,890	-		IAI47_06590	0.36	-1.5
1,371,890	-		IAI47_06590	0.36	+1.0
1,371,890	-		IAI47_06590	0.36	-0.2
1,371,987	+		IAI47_06590	0.44	+1.0
1,372,005	+		IAI47_06590	0.45	-0.4
1,372,115	+		IAI47_06590	0.54	-0.5
1,372,115	+		IAI47_06590	0.54	-0.7
1,372,115	+		IAI47_06590	0.54	+1.2
1,372,115	+		IAI47_06590	0.54	+1.0
1,372,115	+		IAI47_06590	0.54	-1.4
1,372,115	+		IAI47_06590	0.54	+0.3
1,372,116	-		IAI47_06590	0.54	-0.3
1,372,116	-		IAI47_06590	0.54	-1.2
1,372,116	-		IAI47_06590	0.54	-3.2
1,372,116	-		IAI47_06590	0.54	-0.9
1,372,182	-		IAI47_06590	0.60	-1.0
1,372,182	-		IAI47_06590	0.60	+0.1
1,372,182	-		IAI47_06590	0.60	+0.7
1,372,182	-		IAI47_06590	0.60	-1.6
1,372,182	-		IAI47_06590	0.60	-2.1
1,372,223	+		IAI47_06590	0.63	+3.6
1,372,223	+		IAI47_06590	0.63	-0.7
1,372,223	+		IAI47_06590	0.63	+0.5
1,372,223	+		IAI47_06590	0.63	+1.6
1,372,223	+		IAI47_06590	0.63	-2.4
1,372,224	-		IAI47_06590	0.63	+0.6
1,372,224	-		IAI47_06590	0.63	-0.3
1,372,224	-		IAI47_06590	0.63	-0.1
1,372,224	-		IAI47_06590	0.63	+2.0
1,372,224	-		IAI47_06590	0.63	-1.6
1,372,224	-		IAI47_06590	0.63	-0.1
1,372,268	-		IAI47_06590	0.67	-0.5
1,372,326	+		IAI47_06590	0.72	+2.4
1,372,326	+		IAI47_06590	0.72	-0.5
1,372,326	+		IAI47_06590	0.72	+1.5
1,372,326	+		IAI47_06590	0.72	+2.4
1,372,327	-		IAI47_06590	0.72	-0.2
1,372,327	-		IAI47_06590	0.72	+1.7
1,372,327	-		IAI47_06590	0.72	+3.4
1,372,628	+				+1.3
1,372,628	+				+1.6
1,372,628	+				+2.1
1,372,628	+				+1.2
1,372,628	+				+2.2
1,372,628	+				-0.3
1,372,628	+				+1.4
1,372,628	+				+0.1
1,372,629	-				+0.5
1,372,703	+				+0.6
1,372,703	+				-0.4
1,372,704	-				+0.6
1,372,767	+				-0.0
1,372,798	+				+0.3
1,372,798	+				-0.9
1,372,798	+				+0.7
1,372,798	+				-1.2
1,372,802	+				+1.7
1,372,802	+				-2.2
1,372,802	+				-0.7
1,372,802	+				+1.9
1,372,802	+				-1.9
1,372,802	+				+0.7
1,372,802	+				+1.2
1,372,802	+				+0.9
1,372,802	+				+0.9
1,372,802	+				+0.3
1,372,802	+				-0.2
1,372,802	+				-2.9
1,372,802	+				-0.1
1,372,803	-				+0.9
1,372,803	-				-1.7
1,372,803	-				-0.0
1,372,803	-				+1.0
1,372,803	-				+2.6
1,372,803	-				+1.1
1,372,803	-				+0.7
1,372,803	-				+0.8
1,372,803	-				-2.1
1,372,803	-				-1.6
1,372,803	-				-0.3
1,372,803	-				+1.9
1,372,803	-				-1.7
1,372,803	-				+0.3
1,372,803	-				-1.5
1,372,803	-				+1.6
1,372,803	-				+0.4
1,372,803	-				-0.1
1,372,803	-				+2.2
1,372,803	-				+0.8
1,372,803	-				-0.2
1,372,803	-				+0.4
1,372,804	+				-0.6
1,372,804	+				+1.1
1,372,804	+				-0.7
1,372,805	-				+0.5
1,372,805	-				+1.0
1,372,821	+				+0.9
1,372,821	+				-0.7
1,372,822	-				-2.3
1,372,822	-				+0.5
1,372,822	-				-0.6
1,372,822	-				-0.2
1,372,822	-				+0.9
1,372,923	+				+1.8
1,372,923	+				+0.2
1,372,923	+				-0.3
1,372,924	-				-1.0
1,372,942	+				-1.0
1,372,942	+				+1.2
1,372,942	+				-0.7
1,372,942	+				-0.7
1,372,943	-				+3.5
1,372,943	-				+0.7
1,372,943	-				-2.4
1,372,947	+				-1.9
1,372,947	+				-2.0
1,372,947	+				-1.8
1,372,947	+				+1.0
1,372,947	+				+0.6
1,372,948	-				-1.6
1,372,948	-				+0.7
1,372,948	-				+1.9
1,372,948	-				-1.9
1,372,948	-				+0.8
1,373,114	+		IAI47_06595	0.52	-1.6
1,373,114	+		IAI47_06595	0.52	+0.7
1,373,115	-		IAI47_06595	0.52	+0.7
1,373,115	-		IAI47_06595	0.52	-1.2
1,373,115	-		IAI47_06595	0.52	+0.1
1,373,211	+		IAI47_06595	0.82	-2.6
1,373,212	-		IAI47_06595	0.82	+0.7
1,373,212	-		IAI47_06595	0.82	-0.7
1,373,244	-				-0.4
1,373,256	+				-0.5
1,373,256	+				+0.5
1,373,266	+				+0.7
1,373,266	+				-2.8
1,373,266	+				-0.2
1,373,266	+				+0.2
1,373,267	-				+3.9
1,373,267	-				-1.4
1,373,285	+				-0.1
1,373,286	-				-0.1
1,373,298	+				-0.6
1,373,298	+				-0.6
1,373,298	+				-1.6
1,373,298	+				-0.3
1,373,299	-				-1.4
1,373,299	-				+0.2
1,373,299	-				+0.5
1,373,299	-				+1.0
1,373,299	-				-3.1
1,373,371	+				-0.0
1,373,416	+		IAI47_06600	0.10	-0.3
1,373,416	+		IAI47_06600	0.10	-2.8
1,373,417	-		IAI47_06600	0.10	+0.6
1,373,424	+		IAI47_06600	0.11	+0.6
1,373,554	+		IAI47_06600	0.19	+1.1
1,373,554	+		IAI47_06600	0.19	-1.1
1,373,554	+		IAI47_06600	0.19	+0.4
1,373,555	-		IAI47_06600	0.19	-1.9
1,373,555	-		IAI47_06600	0.19	-0.3
1,373,560	+		IAI47_06600	0.19	-1.9
1,373,560	+		IAI47_06600	0.19	+0.3
1,373,560	+		IAI47_06600	0.19	-0.6
1,373,560	+		IAI47_06600	0.19	-0.5
1,373,560	+		IAI47_06600	0.19	-1.2
1,373,560	+		IAI47_06600	0.19	-0.7
1,373,560	+		IAI47_06600	0.19	+0.4
1,373,560	+		IAI47_06600	0.19	+1.3
1,373,560	+		IAI47_06600	0.19	+0.1
1,373,560	+		IAI47_06600	0.19	-1.6
1,373,561	-		IAI47_06600	0.19	-0.0
1,373,561	-		IAI47_06600	0.19	-1.4
1,373,561	-		IAI47_06600	0.19	+0.4
1,373,645	-		IAI47_06600	0.24	-1.5