Strain Fitness in Pantoea sp. MT58 around IAI47_02450

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02440 and IAI47_02445 overlap by 4 nucleotidesIAI47_02445 and IAI47_02450 are separated by 8 nucleotidesIAI47_02450 and IAI47_02455 overlap by 11 nucleotides IAI47_02440: IAI47_02440 - rod shape-determining protein MreC, at 503,013 to 504,032 _02440 IAI47_02445: IAI47_02445 - rod shape-determining protein MreD, at 504,029 to 504,517 _02445 IAI47_02450: IAI47_02450 - septum formation inhibitor Maf, at 504,526 to 505,119 _02450 IAI47_02455: IAI47_02455 - ribonuclease G, at 505,109 to 506,578 _02455 Position (kb) 504 505 506Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 504.471 kb on + strandat 504.471 kb on + strandat 504.471 kb on + strandat 504.471 kb on + strandat 504.472 kb on - strandat 504.477 kb on + strandat 504.477 kb on + strandat 504.477 kb on + strandat 504.477 kb on + strandat 504.477 kb on + strandat 504.480 kb on + strandat 504.481 kb on - strandat 504.515 kb on + strandat 504.516 kb on - strandat 504.526 kb on - strandat 504.526 kb on - strandat 504.531 kb on - strandat 504.575 kb on + strandat 504.576 kb on - strandat 504.576 kb on - strandat 504.655 kb on + strand, within IAI47_02450at 504.655 kb on + strand, within IAI47_02450at 504.822 kb on + strand, within IAI47_02450at 504.822 kb on + strand, within IAI47_02450at 504.822 kb on + strand, within IAI47_02450at 504.823 kb on - strand, within IAI47_02450at 504.823 kb on - strand, within IAI47_02450at 504.823 kb on - strand, within IAI47_02450at 504.934 kb on + strand, within IAI47_02450at 504.934 kb on + strand, within IAI47_02450at 504.934 kb on + strand, within IAI47_02450at 504.934 kb on + strand, within IAI47_02450at 504.934 kb on + strand, within IAI47_02450at 504.935 kb on - strand, within IAI47_02450at 504.935 kb on - strand, within IAI47_02450at 504.935 kb on - strand, within IAI47_02450at 504.935 kb on - strand, within IAI47_02450at 504.935 kb on - strand, within IAI47_02450at 504.935 kb on - strand, within IAI47_02450at 504.936 kb on + strand, within IAI47_02450at 504.937 kb on - strand, within IAI47_02450at 504.937 kb on - strand, within IAI47_02450at 504.937 kb on - strand, within IAI47_02450at 504.937 kb on - strand, within IAI47_02450at 504.937 kb on - strand, within IAI47_02450at 504.960 kb on + strand, within IAI47_02450at 504.960 kb on + strand, within IAI47_02450at 504.960 kb on + strand, within IAI47_02450at 504.973 kb on + strand, within IAI47_02450at 504.974 kb on - strand, within IAI47_02450at 504.974 kb on - strand, within IAI47_02450at 504.974 kb on - strand, within IAI47_02450at 504.974 kb on - strand, within IAI47_02450at 504.978 kb on + strand, within IAI47_02450at 504.979 kb on - strand, within IAI47_02450at 504.979 kb on - strand, within IAI47_02450at 504.979 kb on - strand, within IAI47_02450at 505.014 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.024 kb on + strand, within IAI47_02450at 505.025 kb on - strand, within IAI47_02450at 505.025 kb on - strand, within IAI47_02450at 505.044 kb on - strand, within IAI47_02450at 505.044 kb on - strand, within IAI47_02450at 505.044 kb on - strand, within IAI47_02450at 505.044 kb on - strand, within IAI47_02450at 505.097 kb on + strandat 505.097 kb on + strandat 505.097 kb on + strandat 505.097 kb on + strandat 505.097 kb on + strandat 505.097 kb on + strandat 505.098 kb on - strandat 505.098 kb on - strandat 505.098 kb on - strandat 505.122 kb on + strandat 505.123 kb on - strandat 505.123 kb on - strandat 505.160 kb on + strandat 505.160 kb on + strandat 505.160 kb on + strandat 505.160 kb on + strandat 505.160 kb on + strandat 505.160 kb on + strandat 505.161 kb on - strandat 505.161 kb on - strandat 505.161 kb on - strandat 505.161 kb on - strandat 505.162 kb on + strandat 505.162 kb on + strandat 505.188 kb on + strandat 505.188 kb on + strandat 505.188 kb on + strandat 505.188 kb on + strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.189 kb on - strandat 505.192 kb on + strandat 505.192 kb on + strandat 505.192 kb on + strandat 505.192 kb on + strandat 505.192 kb on + strandat 505.192 kb on + strandat 505.193 kb on - strandat 505.193 kb on - strandat 505.232 kb on + strandat 505.232 kb on + strandat 505.336 kb on + strand, within IAI47_02455at 505.448 kb on - strand, within IAI47_02455at 505.448 kb on - strand, within IAI47_02455at 505.450 kb on + strand, within IAI47_02455at 505.450 kb on + strand, within IAI47_02455at 505.450 kb on + strand, within IAI47_02455at 505.451 kb on - strand, within IAI47_02455at 505.451 kb on - strand, within IAI47_02455at 505.451 kb on - strand, within IAI47_02455at 505.451 kb on - strand, within IAI47_02455at 505.451 kb on - strand, within IAI47_02455at 505.451 kb on - strand, within IAI47_02455at 505.477 kb on + strand, within IAI47_02455at 505.477 kb on + strand, within IAI47_02455at 505.493 kb on + strand, within IAI47_02455at 505.504 kb on + strand, within IAI47_02455at 505.504 kb on + strand, within IAI47_02455at 505.570 kb on + strand, within IAI47_02455at 505.590 kb on - strand, within IAI47_02455at 505.590 kb on - strand, within IAI47_02455at 505.612 kb on + strand, within IAI47_02455at 505.613 kb on - strand, within IAI47_02455at 505.706 kb on - strand, within IAI47_02455at 505.762 kb on + strand, within IAI47_02455at 505.763 kb on - strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.853 kb on + strand, within IAI47_02455at 505.854 kb on - strand, within IAI47_02455at 505.854 kb on - strand, within IAI47_02455at 505.854 kb on - strand, within IAI47_02455at 505.854 kb on - strand, within IAI47_02455at 505.854 kb on - strand, within IAI47_02455at 505.855 kb on + strand, within IAI47_02455at 505.856 kb on - strand, within IAI47_02455at 505.856 kb on - strand, within IAI47_02455at 505.886 kb on + strand, within IAI47_02455at 505.886 kb on + strand, within IAI47_02455at 505.886 kb on + strand, within IAI47_02455at 505.886 kb on + strand, within IAI47_02455at 505.886 kb on + strand, within IAI47_02455at 505.887 kb on - strand, within IAI47_02455at 505.887 kb on - strand, within IAI47_02455at 505.895 kb on - strand, within IAI47_02455at 505.895 kb on - strand, within IAI47_02455at 505.965 kb on + strand, within IAI47_02455at 505.965 kb on + strand, within IAI47_02455at 505.966 kb on - strand, within IAI47_02455at 505.979 kb on + strand, within IAI47_02455at 506.071 kb on + strand, within IAI47_02455at 506.071 kb on + strand, within IAI47_02455at 506.071 kb on + strand, within IAI47_02455at 506.071 kb on + strand, within IAI47_02455at 506.071 kb on + strand, within IAI47_02455at 506.072 kb on - strand, within IAI47_02455at 506.072 kb on - strand, within IAI47_02455at 506.074 kb on + strand, within IAI47_02455at 506.075 kb on - strand, within IAI47_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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504,471 + -0.6
504,471 + -0.3
504,471 + -1.2
504,471 + -1.6
504,472 - -0.3
504,477 + -0.2
504,477 + -0.1
504,477 + +0.1
504,477 + -1.4
504,477 + +0.7
504,480 + -0.3
504,481 - +1.5
504,515 + +1.5
504,516 - +1.2
504,526 - +0.0
504,526 - -0.4
504,531 - +1.7
504,575 + +1.7
504,576 - +4.9
504,576 - -0.0
504,655 + IAI47_02450 0.22 +0.2
504,655 + IAI47_02450 0.22 +0.4
504,822 + IAI47_02450 0.50 -0.2
504,822 + IAI47_02450 0.50 -1.8
504,822 + IAI47_02450 0.50 +0.1
504,823 - IAI47_02450 0.50 +2.6
504,823 - IAI47_02450 0.50 +1.2
504,823 - IAI47_02450 0.50 +0.7
504,934 + IAI47_02450 0.69 -1.9
504,934 + IAI47_02450 0.69 -1.3
504,934 + IAI47_02450 0.69 -0.6
504,934 + IAI47_02450 0.69 -0.7
504,934 + IAI47_02450 0.69 +0.4
504,935 - IAI47_02450 0.69 +0.3
504,935 - IAI47_02450 0.69 +2.0
504,935 - IAI47_02450 0.69 +1.7
504,935 - IAI47_02450 0.69 +2.4
504,935 - IAI47_02450 0.69 +1.3
504,935 - IAI47_02450 0.69 +3.0
504,936 + IAI47_02450 0.69 -2.3
504,937 - IAI47_02450 0.69 +0.8
504,937 - IAI47_02450 0.69 +0.7
504,937 - IAI47_02450 0.69 +1.0
504,937 - IAI47_02450 0.69 +1.4
504,937 - IAI47_02450 0.69 +0.8
504,960 + IAI47_02450 0.73 +0.7
504,960 + IAI47_02450 0.73 -1.3
504,960 + IAI47_02450 0.73 +3.9
504,973 + IAI47_02450 0.75 +0.3
504,974 - IAI47_02450 0.75 +2.4
504,974 - IAI47_02450 0.75 +1.6
504,974 - IAI47_02450 0.75 +0.4
504,974 - IAI47_02450 0.75 +0.6
504,978 + IAI47_02450 0.76 -1.3
504,979 - IAI47_02450 0.76 -0.0
504,979 - IAI47_02450 0.76 +2.0
504,979 - IAI47_02450 0.76 +0.1
505,014 + IAI47_02450 0.82 +1.5
505,024 + IAI47_02450 0.84 +0.9
505,024 + IAI47_02450 0.84 +1.1
505,024 + IAI47_02450 0.84 +2.1
505,024 + IAI47_02450 0.84 -0.4
505,024 + IAI47_02450 0.84 +0.7
505,024 + IAI47_02450 0.84 +0.1
505,024 + IAI47_02450 0.84 +0.7
505,024 + IAI47_02450 0.84 +1.3
505,024 + IAI47_02450 0.84 -1.3
505,024 + IAI47_02450 0.84 -1.6
505,025 - IAI47_02450 0.84 +1.6
505,025 - IAI47_02450 0.84 -1.5
505,044 - IAI47_02450 0.87 +1.8
505,044 - IAI47_02450 0.87 +2.4
505,044 - IAI47_02450 0.87 +1.6
505,044 - IAI47_02450 0.87 +1.3
505,097 + -0.7
505,097 + +2.6
505,097 + +0.2
505,097 + +0.3
505,097 + +0.3
505,097 + +0.2
505,098 - +1.3
505,098 - +4.7
505,098 - +1.8
505,122 + +0.3
505,123 - +2.7
505,123 - +1.6
505,160 + +2.6
505,160 + +2.5
505,160 + +2.0
505,160 + +1.7
505,160 + +1.4
505,160 + +1.9
505,161 - +0.7
505,161 - +0.2
505,161 - +1.4
505,161 - +1.6
505,162 + +2.1
505,162 + +2.0
505,188 + +2.9
505,188 + -1.9
505,188 + +1.5
505,188 + +3.9
505,189 - +2.7
505,189 - +3.4
505,189 - -1.5
505,189 - +2.7
505,189 - +2.6
505,189 - +0.1
505,189 - +2.1
505,189 - -0.6
505,189 - +0.3
505,192 + +4.9
505,192 + +2.1
505,192 + +0.7
505,192 + +2.3
505,192 + +2.2
505,192 + +2.1
505,193 - +3.2
505,193 - +1.0
505,232 + +1.8
505,232 + +3.1
505,336 + IAI47_02455 0.15 +1.5
505,448 - IAI47_02455 0.23 +3.2
505,448 - IAI47_02455 0.23 +1.7
505,450 + IAI47_02455 0.23 +3.3
505,450 + IAI47_02455 0.23 +1.2
505,450 + IAI47_02455 0.23 +0.9
505,451 - IAI47_02455 0.23 +0.7
505,451 - IAI47_02455 0.23 -1.1
505,451 - IAI47_02455 0.23 -1.1
505,451 - IAI47_02455 0.23 +2.7
505,451 - IAI47_02455 0.23 +1.4
505,451 - IAI47_02455 0.23 +0.1
505,477 + IAI47_02455 0.25 +1.1
505,477 + IAI47_02455 0.25 +2.0
505,493 + IAI47_02455 0.26 +3.5
505,504 + IAI47_02455 0.27 +2.7
505,504 + IAI47_02455 0.27 +3.1
505,570 + IAI47_02455 0.31 +2.1
505,590 - IAI47_02455 0.33 +1.4
505,590 - IAI47_02455 0.33 +3.2
505,612 + IAI47_02455 0.34 +1.1
505,613 - IAI47_02455 0.34 +1.5
505,706 - IAI47_02455 0.41 +0.1
505,762 + IAI47_02455 0.44 +2.6
505,763 - IAI47_02455 0.44 +1.6
505,853 + IAI47_02455 0.51 -1.3
505,853 + IAI47_02455 0.51 +3.0
505,853 + IAI47_02455 0.51 +1.4
505,853 + IAI47_02455 0.51 +1.1
505,853 + IAI47_02455 0.51 +1.5
505,853 + IAI47_02455 0.51 +3.4
505,853 + IAI47_02455 0.51 +1.7
505,853 + IAI47_02455 0.51 +1.8
505,853 + IAI47_02455 0.51 +1.6
505,853 + IAI47_02455 0.51 +0.1
505,853 + IAI47_02455 0.51 +0.2
505,853 + IAI47_02455 0.51 -0.3
505,853 + IAI47_02455 0.51 +3.2
505,854 - IAI47_02455 0.51 +1.9
505,854 - IAI47_02455 0.51 +1.7
505,854 - IAI47_02455 0.51 +2.1
505,854 - IAI47_02455 0.51 +1.2
505,854 - IAI47_02455 0.51 +1.4
505,855 + IAI47_02455 0.51 +2.7
505,856 - IAI47_02455 0.51 -1.5
505,856 - IAI47_02455 0.51 -0.5
505,886 + IAI47_02455 0.53 +1.2
505,886 + IAI47_02455 0.53 +2.4
505,886 + IAI47_02455 0.53 -0.9
505,886 + IAI47_02455 0.53 +0.7
505,886 + IAI47_02455 0.53 +1.6
505,887 - IAI47_02455 0.53 +1.4
505,887 - IAI47_02455 0.53 +1.2
505,895 - IAI47_02455 0.53 +1.5
505,895 - IAI47_02455 0.53 +2.3
505,965 + IAI47_02455 0.58 +1.5
505,965 + IAI47_02455 0.58 +2.0
505,966 - IAI47_02455 0.58 +1.7
505,979 + IAI47_02455 0.59 +1.9
506,071 + IAI47_02455 0.65 +0.1
506,071 + IAI47_02455 0.65 +1.2
506,071 + IAI47_02455 0.65 -1.5
506,071 + IAI47_02455 0.65 +2.3
506,071 + IAI47_02455 0.65 +1.2
506,072 - IAI47_02455 0.66 +1.5
506,072 - IAI47_02455 0.66 +2.1
506,074 + IAI47_02455 0.66 +3.0
506,075 - IAI47_02455 0.66 +1.8

Or see this region's nucleotide sequence