Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00930 and IAI47_00935 overlap by 18 nucleotides IAI47_00935 and IAI47_00940 are separated by 192 nucleotides IAI47_00940 and IAI47_00945 are separated by 14 nucleotides
IAI47_00930: IAI47_00930 - DNA-binding transcriptional regulator OxyR, at 198,897 to 199,814
_00930
IAI47_00935: IAI47_00935 - Si-specific NAD(P)(+) transhydrogenase, at 199,797 to 201,197
_00935
IAI47_00940: IAI47_00940 - HTH-type transcriptional repressor FabR, at 201,390 to 202,037
_00940
IAI47_00945: IAI47_00945 - YijD family membrane protein, at 202,052 to 202,405
_00945
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 198.814 kb on + strand at 198.814 kb on + strand at 198.815 kb on - strand at 198.815 kb on - strand at 198.853 kb on + strand at 198.854 kb on - strand at 198.858 kb on + strand at 198.859 kb on - strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.892 kb on + strand at 198.893 kb on - strand at 198.893 kb on - strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.895 kb on + strand at 198.896 kb on - strand at 198.902 kb on + strand at 198.902 kb on + strand at 198.902 kb on + strand at 198.902 kb on + strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.903 kb on - strand at 198.918 kb on + strand at 198.918 kb on + strand at 198.918 kb on + strand at 198.919 kb on - strand at 198.919 kb on - strand at 198.992 kb on - strand, within IAI47_00930 at 198.992 kb on - strand, within IAI47_00930 at 199.008 kb on - strand, within IAI47_00930 at 199.055 kb on + strand, within IAI47_00930 at 199.056 kb on - strand, within IAI47_00930 at 199.056 kb on - strand, within IAI47_00930 at 199.081 kb on + strand, within IAI47_00930 at 199.081 kb on + strand, within IAI47_00930 at 199.103 kb on + strand, within IAI47_00930 at 199.103 kb on + strand, within IAI47_00930 at 199.104 kb on - strand, within IAI47_00930 at 199.178 kb on + strand, within IAI47_00930 at 199.179 kb on - strand, within IAI47_00930 at 199.207 kb on - strand, within IAI47_00930 at 199.210 kb on + strand, within IAI47_00930 at 199.210 kb on + strand, within IAI47_00930 at 199.210 kb on + strand, within IAI47_00930 at 199.211 kb on - strand, within IAI47_00930 at 199.224 kb on - strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.263 kb on + strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.264 kb on - strand, within IAI47_00930 at 199.404 kb on + strand, within IAI47_00930 at 199.404 kb on + strand, within IAI47_00930 at 199.405 kb on - strand, within IAI47_00930 at 199.405 kb on - strand, within IAI47_00930 at 199.544 kb on + strand, within IAI47_00930 at 199.544 kb on + strand, within IAI47_00930 at 199.583 kb on + strand, within IAI47_00930 at 199.583 kb on + strand, within IAI47_00930 at 199.584 kb on - strand, within IAI47_00930 at 199.584 kb on - strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.607 kb on + strand, within IAI47_00930 at 199.608 kb on - strand, within IAI47_00930 at 199.608 kb on - strand, within IAI47_00930 at 199.608 kb on - strand, within IAI47_00930 at 199.643 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.662 kb on + strand, within IAI47_00930 at 199.663 kb on - strand, within IAI47_00930 at 199.674 kb on + strand, within IAI47_00930 at 199.674 kb on + strand, within IAI47_00930 at 199.674 kb on + strand, within IAI47_00930 at 199.675 kb on - strand, within IAI47_00930 at 199.710 kb on + strand, within IAI47_00930 at 199.711 kb on - strand, within IAI47_00930 at 199.741 kb on - strand at 199.763 kb on + strand at 199.763 kb on + strand at 199.764 kb on - strand at 199.764 kb on - strand at 199.764 kb on - strand at 199.782 kb on + strand at 199.782 kb on + strand at 199.799 kb on - strand at 199.799 kb on - strand at 199.799 kb on - strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.863 kb on - strand at 199.863 kb on - strand at 199.863 kb on - strand at 199.863 kb on - strand at 199.863 kb on - strand at 200.057 kb on + strand, within IAI47_00935 at 200.146 kb on + strand, within IAI47_00935 at 200.147 kb on - strand, within IAI47_00935 at 200.162 kb on + strand, within IAI47_00935 at 200.279 kb on - strand, within IAI47_00935 at 200.279 kb on - strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.302 kb on + strand, within IAI47_00935 at 200.303 kb on - strand, within IAI47_00935 at 200.399 kb on - strand, within IAI47_00935 at 200.525 kb on - strand, within IAI47_00935 at 200.525 kb on - strand, within IAI47_00935 at 200.627 kb on - strand, within IAI47_00935 at 200.657 kb on + strand, within IAI47_00935 at 200.658 kb on - strand, within IAI47_00935 at 200.658 kb on - strand, within IAI47_00935 at 200.687 kb on + strand, within IAI47_00935 at 200.688 kb on - strand, within IAI47_00935 at 200.693 kb on + strand, within IAI47_00935 at 200.694 kb on - strand, within IAI47_00935 at 200.723 kb on + strand, within IAI47_00935 at 200.828 kb on + strand, within IAI47_00935 at 200.885 kb on - strand, within IAI47_00935 at 200.937 kb on - strand, within IAI47_00935 at 201.179 kb on - strand at 201.213 kb on + strand at 201.214 kb on - strand at 201.241 kb on - strand at 201.267 kb on - strand at 201.268 kb on + strand at 201.268 kb on + strand at 201.269 kb on - strand at 201.269 kb on - strand at 201.337 kb on + strand at 201.337 kb on + strand at 201.338 kb on - strand at 201.354 kb on + strand at 201.354 kb on + strand at 201.354 kb on + strand at 201.354 kb on + strand at 201.355 kb on - strand at 201.355 kb on - strand at 201.356 kb on + strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.376 kb on + strand at 201.419 kb on + strand at 201.419 kb on + strand at 201.419 kb on + strand at 201.420 kb on - strand at 201.420 kb on - strand at 201.420 kb on - strand at 201.428 kb on + strand at 201.428 kb on + strand at 201.428 kb on + strand at 201.428 kb on + strand at 201.429 kb on - strand at 201.429 kb on - strand at 201.429 kb on - strand at 201.653 kb on + strand, within IAI47_00940 at 201.653 kb on + strand, within IAI47_00940 at 201.654 kb on - strand, within IAI47_00940 at 201.654 kb on - strand, within IAI47_00940 at 201.674 kb on + strand, within IAI47_00940 at 201.675 kb on - strand, within IAI47_00940 at 201.675 kb on - strand, within IAI47_00940 at 201.675 kb on - strand, within IAI47_00940 at 201.715 kb on + strand, within IAI47_00940 at 201.716 kb on - strand, within IAI47_00940 at 201.782 kb on + strand, within IAI47_00940 at 201.782 kb on + strand, within IAI47_00940 at 201.782 kb on + strand, within IAI47_00940 at 201.783 kb on - strand, within IAI47_00940 at 201.783 kb on - strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.801 kb on + strand, within IAI47_00940 at 201.802 kb on - strand, within IAI47_00940 at 201.802 kb on - strand, within IAI47_00940 at 201.802 kb on - strand, within IAI47_00940 at 201.837 kb on - strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.920 kb on + strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.921 kb on - strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.943 kb on + strand, within IAI47_00940 at 201.944 kb on - strand, within IAI47_00940 at 201.944 kb on - strand, within IAI47_00940 at 201.944 kb on - strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.972 kb on + strand, within IAI47_00940 at 201.973 kb on - strand at 201.973 kb on - strand at 201.973 kb on - strand at 201.973 kb on - strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.975 kb on + strand at 201.976 kb on - strand at 201.976 kb on - strand at 201.976 kb on - strand at 201.976 kb on - strand at 201.982 kb on - strand at 202.039 kb on + strand at 202.039 kb on + strand at 202.039 kb on + strand at 202.039 kb on + strand at 202.040 kb on - strand at 202.040 kb on - strand at 202.066 kb on + strand at 202.075 kb on + strand at 202.076 kb on - strand at 202.099 kb on + strand, within IAI47_00945 at 202.099 kb on + strand, within IAI47_00945 at 202.099 kb on + strand, within IAI47_00945 at 202.099 kb on + strand, within IAI47_00945 at 202.102 kb on + strand, within IAI47_00945 at 202.110 kb on + strand, within IAI47_00945 at 202.110 kb on + strand, within IAI47_00945
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 198,814 + +0.6 198,814 + +0.4 198,815 - -3.4 198,815 - -0.4 198,853 + -1.7 198,854 - +1.3 198,858 + -2.7 198,859 - -2.0 198,892 + +0.6 198,892 + +1.3 198,892 + +0.6 198,892 + -0.5 198,892 + +1.4 198,893 - -0.3 198,893 - -2.3 198,895 + +0.8 198,895 + -0.3 198,895 + -0.9 198,895 + +0.8 198,895 + -0.3 198,895 + +1.2 198,896 - -3.0 198,902 + -2.4 198,902 + -0.8 198,902 + -3.1 198,902 + -1.8 198,903 - -0.8 198,903 - -3.1 198,903 - -2.5 198,903 - -2.0 198,903 - -3.2 198,918 + -0.8 198,918 + -0.8 198,918 + -2.0 198,919 - -2.1 198,919 - -2.9 198,992 - IAI47_00930 0.10 -2.0 198,992 - IAI47_00930 0.10 -2.0 199,008 - IAI47_00930 0.12 -0.5 199,055 + IAI47_00930 0.17 -3.4 199,056 - IAI47_00930 0.17 +0.3 199,056 - IAI47_00930 0.17 -2.3 199,081 + IAI47_00930 0.20 -2.3 199,081 + IAI47_00930 0.20 -1.9 199,103 + IAI47_00930 0.22 -0.5 199,103 + IAI47_00930 0.22 -0.3 199,104 - IAI47_00930 0.23 -2.0 199,178 + IAI47_00930 0.31 -1.8 199,179 - IAI47_00930 0.31 -1.0 199,207 - IAI47_00930 0.34 -4.5 199,210 + IAI47_00930 0.34 -1.9 199,210 + IAI47_00930 0.34 -4.0 199,210 + IAI47_00930 0.34 -1.3 199,211 - IAI47_00930 0.34 -2.1 199,224 - IAI47_00930 0.36 -1.1 199,263 + IAI47_00930 0.40 -0.8 199,263 + IAI47_00930 0.40 -1.9 199,263 + IAI47_00930 0.40 +0.5 199,263 + IAI47_00930 0.40 -1.2 199,263 + IAI47_00930 0.40 -0.5 199,263 + IAI47_00930 0.40 -1.0 199,263 + IAI47_00930 0.40 -0.2 199,263 + IAI47_00930 0.40 -1.0 199,263 + IAI47_00930 0.40 -0.6 199,263 + IAI47_00930 0.40 -1.6 199,263 + IAI47_00930 0.40 +0.5 199,264 - IAI47_00930 0.40 -3.1 199,264 - IAI47_00930 0.40 -1.9 199,264 - IAI47_00930 0.40 -0.8 199,264 - IAI47_00930 0.40 -2.8 199,264 - IAI47_00930 0.40 -2.1 199,264 - IAI47_00930 0.40 -2.3 199,264 - IAI47_00930 0.40 -1.3 199,264 - IAI47_00930 0.40 -2.3 199,264 - IAI47_00930 0.40 -2.0 199,404 + IAI47_00930 0.55 -2.8 199,404 + IAI47_00930 0.55 -1.5 199,405 - IAI47_00930 0.55 -1.4 199,405 - IAI47_00930 0.55 -1.2 199,544 + IAI47_00930 0.70 +0.2 199,544 + IAI47_00930 0.70 -2.0 199,583 + IAI47_00930 0.75 +0.0 199,583 + IAI47_00930 0.75 -2.2 199,584 - IAI47_00930 0.75 -3.3 199,584 - IAI47_00930 0.75 -1.6 199,607 + IAI47_00930 0.77 -0.8 199,607 + IAI47_00930 0.77 -1.3 199,607 + IAI47_00930 0.77 -1.5 199,607 + IAI47_00930 0.77 -0.5 199,608 - IAI47_00930 0.77 -0.6 199,608 - IAI47_00930 0.77 -1.2 199,608 - IAI47_00930 0.77 -0.2 199,643 + IAI47_00930 0.81 -2.4 199,662 + IAI47_00930 0.83 -1.9 199,662 + IAI47_00930 0.83 -2.0 199,662 + IAI47_00930 0.83 -2.7 199,662 + IAI47_00930 0.83 -1.8 199,663 - IAI47_00930 0.83 -0.7 199,674 + IAI47_00930 0.85 -1.9 199,674 + IAI47_00930 0.85 -0.5 199,674 + IAI47_00930 0.85 -1.6 199,675 - IAI47_00930 0.85 -1.3 199,710 + IAI47_00930 0.89 -1.5 199,711 - IAI47_00930 0.89 -2.1 199,741 - -1.8 199,763 + -1.2 199,763 + -1.5 199,764 - -3.0 199,764 - -3.7 199,764 - -1.0 199,782 + +1.2 199,782 + +0.5 199,799 - -2.1 199,799 - -0.2 199,799 - -1.3 199,862 + +3.2 199,862 + +3.1 199,862 + +1.0 199,862 + +1.1 199,863 - +2.8 199,863 - +2.4 199,863 - +2.7 199,863 - +1.8 199,863 - +2.7 200,057 + IAI47_00935 0.19 +0.8 200,146 + IAI47_00935 0.25 +2.9 200,147 - IAI47_00935 0.25 +1.1 200,162 + IAI47_00935 0.26 +3.1 200,279 - IAI47_00935 0.34 +2.6 200,279 - IAI47_00935 0.34 -0.5 200,302 + IAI47_00935 0.36 +2.3 200,302 + IAI47_00935 0.36 +2.9 200,302 + IAI47_00935 0.36 -1.6 200,302 + IAI47_00935 0.36 +1.8 200,302 + IAI47_00935 0.36 -0.2 200,303 - IAI47_00935 0.36 +1.3 200,399 - IAI47_00935 0.43 +4.3 200,525 - IAI47_00935 0.52 +1.8 200,525 - IAI47_00935 0.52 +2.3 200,627 - IAI47_00935 0.59 +3.8 200,657 + IAI47_00935 0.61 +4.0 200,658 - IAI47_00935 0.61 +3.1 200,658 - IAI47_00935 0.61 +2.2 200,687 + IAI47_00935 0.64 +0.8 200,688 - IAI47_00935 0.64 +3.0 200,693 + IAI47_00935 0.64 +3.6 200,694 - IAI47_00935 0.64 +3.2 200,723 + IAI47_00935 0.66 +4.6 200,828 + IAI47_00935 0.74 +0.5 200,885 - IAI47_00935 0.78 -0.2 200,937 - IAI47_00935 0.81 +4.6 201,179 - +2.2 201,213 + +1.8 201,214 - +2.6 201,241 - +0.2 201,267 - -2.2 201,268 + -1.2 201,268 + +0.5 201,269 - +0.2 201,269 - -0.3 201,337 + +0.7 201,337 + +1.1 201,338 - +2.1 201,354 + -0.2 201,354 + +1.1 201,354 + +0.4 201,354 + -0.7 201,355 - -0.9 201,355 - +1.1 201,356 + -1.2 201,357 - -2.7 201,357 - -1.3 201,376 + -1.0 201,419 + -2.9 201,419 + -1.7 201,419 + -3.2 201,420 - -0.2 201,420 - -1.1 201,420 - -1.5 201,428 + +1.3 201,428 + -2.4 201,428 + +1.4 201,428 + -0.6 201,429 - -1.7 201,429 - -2.0 201,429 - -1.2 201,653 + IAI47_00940 0.41 -2.9 201,653 + IAI47_00940 0.41 +0.1 201,654 - IAI47_00940 0.41 -1.0 201,654 - IAI47_00940 0.41 -2.7 201,674 + IAI47_00940 0.44 -0.3 201,675 - IAI47_00940 0.44 -1.4 201,675 - IAI47_00940 0.44 -2.6 201,675 - IAI47_00940 0.44 +0.6 201,715 + IAI47_00940 0.50 -0.4 201,716 - IAI47_00940 0.50 -1.5 201,782 + IAI47_00940 0.60 -2.1 201,782 + IAI47_00940 0.60 -1.6 201,782 + IAI47_00940 0.60 -0.8 201,783 - IAI47_00940 0.61 -2.1 201,783 - IAI47_00940 0.61 +1.3 201,801 + IAI47_00940 0.63 -1.3 201,801 + IAI47_00940 0.63 -2.3 201,801 + IAI47_00940 0.63 -0.2 201,801 + IAI47_00940 0.63 -0.5 201,801 + IAI47_00940 0.63 -1.2 201,801 + IAI47_00940 0.63 -2.7 201,802 - IAI47_00940 0.64 +0.8 201,802 - IAI47_00940 0.64 -1.5 201,802 - IAI47_00940 0.64 -1.1 201,837 - IAI47_00940 0.69 -1.7 201,920 + IAI47_00940 0.82 -1.2 201,920 + IAI47_00940 0.82 -0.2 201,920 + IAI47_00940 0.82 -1.3 201,920 + IAI47_00940 0.82 -2.9 201,921 - IAI47_00940 0.82 -3.4 201,921 - IAI47_00940 0.82 -2.3 201,921 - IAI47_00940 0.82 -3.0 201,921 - IAI47_00940 0.82 -2.1 201,921 - IAI47_00940 0.82 -1.3 201,921 - IAI47_00940 0.82 -1.9 201,921 - IAI47_00940 0.82 -2.4 201,921 - IAI47_00940 0.82 -2.5 201,921 - IAI47_00940 0.82 -2.4 201,921 - IAI47_00940 0.82 -3.0 201,943 + IAI47_00940 0.85 -2.9 201,943 + IAI47_00940 0.85 -2.4 201,943 + IAI47_00940 0.85 -2.9 201,943 + IAI47_00940 0.85 -1.3 201,944 - IAI47_00940 0.85 -1.3 201,944 - IAI47_00940 0.85 -1.7 201,944 - IAI47_00940 0.85 -2.0 201,972 + IAI47_00940 0.90 -1.3 201,972 + IAI47_00940 0.90 -0.3 201,972 + IAI47_00940 0.90 -3.9 201,972 + IAI47_00940 0.90 -1.5 201,972 + IAI47_00940 0.90 -1.1 201,972 + IAI47_00940 0.90 -0.6 201,972 + IAI47_00940 0.90 -0.5 201,973 - -2.6 201,973 - -1.5 201,973 - +0.2 201,973 - -1.7 201,975 + -1.7 201,975 + -1.9 201,975 + +2.8 201,975 + -1.0 201,975 + -0.0 201,976 - -0.4 201,976 - -2.3 201,976 - -0.3 201,976 - -2.6 201,982 - -0.8 202,039 + +0.8 202,039 + -0.1 202,039 + +3.5 202,039 + +1.4 202,040 - -1.2 202,040 - -0.8 202,066 + +2.6 202,075 + -0.6 202,076 - +2.2 202,099 + IAI47_00945 0.13 -1.5 202,099 + IAI47_00945 0.13 +0.8 202,099 + IAI47_00945 0.13 +0.7 202,099 + IAI47_00945 0.13 -0.1 202,102 + IAI47_00945 0.14 +0.1 202,110 + IAI47_00945 0.16 -0.0 202,110 + IAI47_00945 0.16 +1.6
Or see this region's nucleotide sequence