Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2290

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2289 and Ga0059261_2290 are separated by 158 nucleotidesGa0059261_2290 and Ga0059261_2291 are separated by 241 nucleotides Ga0059261_2289: Ga0059261_2289 - Glycine/D-amino acid oxidases (deaminating), at 2,392,626 to 2,394,164 _2289 Ga0059261_2290: Ga0059261_2290 - tRNA, at 2,394,323 to 2,394,409 _2290 Ga0059261_2291: Ga0059261_2291 - putative efflux protein, MATE family, at 2,394,651 to 2,396,009 _2291 Position (kb) 2394 2395Strain fitness (log2 ratio) -2 -1 0 1 2at 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strandat 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strandat 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strand, within Ga0059261_2289at 2393.363 kb on + strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.364 kb on - strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.365 kb on + strand, within Ga0059261_2289at 2393.366 kb on - strand, within Ga0059261_2289at 2393.366 kb on - strand, within Ga0059261_2289at 2393.366 kb on - strand, within Ga0059261_2289at 2393.366 kb on - strand, within Ga0059261_2289at 2393.366 kb on - strand, within Ga0059261_2289at 2393.366 kb on - strand, within Ga0059261_2289at 2393.382 kb on + strand, within Ga0059261_2289at 2393.382 kb on + strand, within Ga0059261_2289at 2393.383 kb on - strand, within Ga0059261_2289at 2393.444 kb on - strand, within Ga0059261_2289at 2393.535 kb on + strand, within Ga0059261_2289at 2393.644 kb on + strand, within Ga0059261_2289at 2393.645 kb on - strand, within Ga0059261_2289at 2393.645 kb on - strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.665 kb on + strand, within Ga0059261_2289at 2393.666 kb on - strand, within Ga0059261_2289at 2393.666 kb on - strand, within Ga0059261_2289at 2393.666 kb on - strand, within Ga0059261_2289at 2393.666 kb on - strand, within Ga0059261_2289at 2393.671 kb on + strand, within Ga0059261_2289at 2393.671 kb on + strand, within Ga0059261_2289at 2393.671 kb on + strandat 2393.671 kb on + strand, within Ga0059261_2289at 2393.671 kb on + strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.672 kb on - strand, within Ga0059261_2289at 2393.747 kb on + strand, within Ga0059261_2289at 2393.747 kb on + strand, within Ga0059261_2289at 2393.747 kb on + strand, within Ga0059261_2289at 2393.747 kb on + strand, within Ga0059261_2289at 2393.747 kb on + strand, within Ga0059261_2289at 2393.747 kb on + strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.748 kb on - strand, within Ga0059261_2289at 2393.758 kb on + strand, within Ga0059261_2289at 2393.758 kb on + strand, within Ga0059261_2289at 2393.759 kb on - strand, within Ga0059261_2289at 2393.759 kb on - strand, within Ga0059261_2289at 2393.759 kb on - strand, within Ga0059261_2289at 2393.759 kb on - strand, within Ga0059261_2289at 2393.863 kb on + strand, within Ga0059261_2289at 2393.863 kb on + strand, within Ga0059261_2289at 2393.864 kb on - strand, within Ga0059261_2289at 2393.968 kb on + strand, within Ga0059261_2289at 2393.968 kb on + strand, within Ga0059261_2289at 2393.968 kb on + strandat 2393.968 kb on + strand, within Ga0059261_2289at 2393.968 kb on + strand, within Ga0059261_2289at 2393.968 kb on + strand, within Ga0059261_2289at 2393.969 kb on - strand, within Ga0059261_2289at 2393.969 kb on - strand, within Ga0059261_2289at 2393.969 kb on - strand, within Ga0059261_2289at 2393.969 kb on - strand, within Ga0059261_2289at 2393.969 kb on - strand, within Ga0059261_2289at 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.209 kb on + strandat 2394.210 kb on - strandat 2394.210 kb on - strandat 2394.210 kb on - strandat 2394.210 kb on - strandat 2394.210 kb on - strandat 2394.210 kb on - strandat 2394.210 kb on - strandat 2394.211 kb on + strandat 2394.211 kb on + strandat 2394.212 kb on - strandat 2394.220 kb on - strandat 2394.220 kb on - strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.223 kb on + strandat 2394.224 kb on - strandat 2394.224 kb on - strandat 2394.224 kb on - strandat 2394.224 kb on - strandat 2394.224 kb on - strandat 2394.224 kb on - strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.225 kb on + strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.226 kb on - strandat 2394.227 kb on - strandat 2394.299 kb on + strandat 2394.300 kb on - strandat 2394.300 kb on - strandat 2394.557 kb on + strandat 2394.559 kb on + strandat 2394.559 kb on + strandat 2394.559 kb on + strandat 2394.559 kb on + strandat 2394.560 kb on - strandat 2394.560 kb on - strandat 2394.560 kb on - strandat 2394.560 kb on - strandat 2394.560 kb on - strandat 2394.560 kb on - strandat 2394.564 kb on + strandat 2394.564 kb on + strandat 2394.564 kb on + strandat 2394.565 kb on - strandat 2394.637 kb on - strandat 2394.824 kb on + strand, within Ga0059261_2291at 2395.072 kb on - strand, within Ga0059261_2291at 2395.072 kb on - strand, within Ga0059261_2291

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,393,363 + Ga0059261_2289 0.48 +0.5
2,393,363 + Ga0059261_2289 0.48 -1.5
2,393,363 + Ga0059261_2289 0.48 -0.8
2,393,363 + +1.2
2,393,363 + Ga0059261_2289 0.48 +1.4
2,393,363 + Ga0059261_2289 0.48 -0.8
2,393,363 + -0.2
2,393,363 + Ga0059261_2289 0.48 -1.2
2,393,363 + Ga0059261_2289 0.48 -0.6
2,393,363 + Ga0059261_2289 0.48 -0.1
2,393,363 + Ga0059261_2289 0.48 +0.1
2,393,364 - Ga0059261_2289 0.48 -1.0
2,393,364 - Ga0059261_2289 0.48 -0.4
2,393,364 - Ga0059261_2289 0.48 +1.1
2,393,364 - Ga0059261_2289 0.48 +0.2
2,393,364 - Ga0059261_2289 0.48 +1.2
2,393,364 - Ga0059261_2289 0.48 +0.1
2,393,364 - Ga0059261_2289 0.48 -1.1
2,393,364 - Ga0059261_2289 0.48 -0.1
2,393,364 - Ga0059261_2289 0.48 -0.6
2,393,364 - Ga0059261_2289 0.48 +0.5
2,393,365 + Ga0059261_2289 0.48 -0.2
2,393,365 + Ga0059261_2289 0.48 +1.3
2,393,365 + Ga0059261_2289 0.48 -1.4
2,393,365 + Ga0059261_2289 0.48 -0.9
2,393,365 + Ga0059261_2289 0.48 +0.7
2,393,365 + Ga0059261_2289 0.48 -1.1
2,393,365 + Ga0059261_2289 0.48 -0.1
2,393,366 - Ga0059261_2289 0.48 -0.7
2,393,366 - Ga0059261_2289 0.48 +0.6
2,393,366 - Ga0059261_2289 0.48 +1.0
2,393,366 - Ga0059261_2289 0.48 -0.2
2,393,366 - Ga0059261_2289 0.48 -0.3
2,393,366 - Ga0059261_2289 0.48 +0.5
2,393,382 + Ga0059261_2289 0.49 +0.5
2,393,382 + Ga0059261_2289 0.49 -0.5
2,393,383 - Ga0059261_2289 0.49 +1.2
2,393,444 - Ga0059261_2289 0.53 -0.8
2,393,535 + Ga0059261_2289 0.59 -1.0
2,393,644 + Ga0059261_2289 0.66 +0.1
2,393,645 - Ga0059261_2289 0.66 +2.2
2,393,645 - Ga0059261_2289 0.66 -1.2
2,393,665 + Ga0059261_2289 0.68 -0.5
2,393,665 + Ga0059261_2289 0.68 -0.6
2,393,665 + Ga0059261_2289 0.68 +1.2
2,393,665 + Ga0059261_2289 0.68 +0.8
2,393,665 + Ga0059261_2289 0.68 -0.3
2,393,665 + Ga0059261_2289 0.68 +0.8
2,393,665 + Ga0059261_2289 0.68 +0.2
2,393,665 + Ga0059261_2289 0.68 +0.3
2,393,666 - Ga0059261_2289 0.68 +0.5
2,393,666 - Ga0059261_2289 0.68 -0.6
2,393,666 - Ga0059261_2289 0.68 -2.0
2,393,666 - Ga0059261_2289 0.68 -0.2
2,393,671 + Ga0059261_2289 0.68 +0.1
2,393,671 + Ga0059261_2289 0.68 -0.3
2,393,671 + +1.8
2,393,671 + Ga0059261_2289 0.68 -0.2
2,393,671 + Ga0059261_2289 0.68 -0.0
2,393,672 - Ga0059261_2289 0.68 -0.4
2,393,672 - Ga0059261_2289 0.68 +1.8
2,393,672 - Ga0059261_2289 0.68 +0.1
2,393,672 - Ga0059261_2289 0.68 -2.0
2,393,672 - Ga0059261_2289 0.68 -0.6
2,393,672 - Ga0059261_2289 0.68 -0.8
2,393,672 - Ga0059261_2289 0.68 +1.0
2,393,747 + Ga0059261_2289 0.73 -1.5
2,393,747 + Ga0059261_2289 0.73 +0.1
2,393,747 + Ga0059261_2289 0.73 +1.8
2,393,747 + Ga0059261_2289 0.73 +0.6
2,393,747 + Ga0059261_2289 0.73 +0.8
2,393,747 + Ga0059261_2289 0.73 +0.8
2,393,748 - Ga0059261_2289 0.73 +0.3
2,393,748 - Ga0059261_2289 0.73 -0.8
2,393,748 - Ga0059261_2289 0.73 -2.7
2,393,748 - Ga0059261_2289 0.73 -0.2
2,393,748 - Ga0059261_2289 0.73 +1.2
2,393,748 - Ga0059261_2289 0.73 -0.4
2,393,748 - Ga0059261_2289 0.73 -0.5
2,393,758 + Ga0059261_2289 0.74 +0.4
2,393,758 + Ga0059261_2289 0.74 -0.5
2,393,759 - Ga0059261_2289 0.74 -1.2
2,393,759 - Ga0059261_2289 0.74 -0.5
2,393,759 - Ga0059261_2289 0.74 +1.6
2,393,759 - Ga0059261_2289 0.74 +0.8
2,393,863 + Ga0059261_2289 0.80 -0.4
2,393,863 + Ga0059261_2289 0.80 -0.5
2,393,864 - Ga0059261_2289 0.80 -0.6
2,393,968 + Ga0059261_2289 0.87 -1.3
2,393,968 + Ga0059261_2289 0.87 -0.1
2,393,968 + +0.8
2,393,968 + Ga0059261_2289 0.87 -1.4
2,393,968 + Ga0059261_2289 0.87 -0.5
2,393,968 + Ga0059261_2289 0.87 +0.3
2,393,969 - Ga0059261_2289 0.87 +0.5
2,393,969 - Ga0059261_2289 0.87 -0.3
2,393,969 - Ga0059261_2289 0.87 -0.2
2,393,969 - Ga0059261_2289 0.87 +0.2
2,393,969 - Ga0059261_2289 0.87 +0.8
2,394,209 + -0.5
2,394,209 + +0.5
2,394,209 + -1.4
2,394,209 + -0.0
2,394,209 + +0.3
2,394,209 + +0.6
2,394,209 + +0.1
2,394,209 + -0.5
2,394,209 + -1.2
2,394,209 + -1.8
2,394,209 + -0.1
2,394,209 + -1.1
2,394,209 + +0.8
2,394,209 + +1.2
2,394,209 + -1.6
2,394,209 + +0.8
2,394,209 + +1.0
2,394,210 - -0.8
2,394,210 - +0.3
2,394,210 - -0.3
2,394,210 - +0.1
2,394,210 - -1.7
2,394,210 - -0.3
2,394,210 - -0.8
2,394,211 + +0.8
2,394,211 + -0.6
2,394,212 - -0.1
2,394,220 - +0.3
2,394,220 - +0.9
2,394,223 + -0.3
2,394,223 + +0.9
2,394,223 + -0.2
2,394,223 + -0.0
2,394,223 + +0.0
2,394,223 + -0.7
2,394,223 + +0.2
2,394,223 + -0.4
2,394,223 + -1.2
2,394,223 + +0.4
2,394,223 + +0.6
2,394,224 - +0.5
2,394,224 - +0.4
2,394,224 - +0.2
2,394,224 - -0.8
2,394,224 - -0.8
2,394,224 - +0.3
2,394,225 + -0.1
2,394,225 + +1.6
2,394,225 + +0.7
2,394,225 + -1.1
2,394,225 + -0.4
2,394,225 + +1.2
2,394,225 + -0.7
2,394,225 + +0.8
2,394,225 + -0.3
2,394,225 + -0.7
2,394,225 + +0.6
2,394,225 + -1.0
2,394,225 + -0.8
2,394,226 - -0.8
2,394,226 - -0.6
2,394,226 - -0.1
2,394,226 - +0.4
2,394,226 - -0.1
2,394,226 - -0.1
2,394,226 - +0.6
2,394,226 - -0.3
2,394,226 - -1.4
2,394,226 - -0.2
2,394,227 - -0.9
2,394,299 + -0.7
2,394,300 - -0.6
2,394,300 - -0.2
2,394,557 + +0.2
2,394,559 + +0.6
2,394,559 + -0.6
2,394,559 + +0.4
2,394,559 + -0.3
2,394,560 - -0.6
2,394,560 - +0.0
2,394,560 - +0.2
2,394,560 - -0.7
2,394,560 - -1.7
2,394,560 - +0.5
2,394,564 + +0.4
2,394,564 + +0.4
2,394,564 + -0.8
2,394,565 - -0.5
2,394,637 - -0.9
2,394,824 + Ga0059261_2291 0.13 -0.8
2,395,072 - Ga0059261_2291 0.31 +0.3
2,395,072 - Ga0059261_2291 0.31 -1.2

Or see this region's nucleotide sequence