Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0778

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0777 and Ga0059261_0778 overlap by 4 nucleotidesGa0059261_0778 and Ga0059261_0779 are separated by 138 nucleotides Ga0059261_0777: Ga0059261_0777 - FecR family protein, at 811,959 to 813,056 _0777 Ga0059261_0778: Ga0059261_0778 - RNA polymerase sigma factor, sigma-70 family, at 813,053 to 813,586 _0778 Ga0059261_0779: Ga0059261_0779 - Lysophospholipase, at 813,725 to 814,618 _0779 Position (kb) 813 814Strain fitness (log2 ratio) -2 -1 0 1at 812.161 kb on + strand, within Ga0059261_0777at 812.161 kb on + strand, within Ga0059261_0777at 812.161 kb on + strand, within Ga0059261_0777at 812.215 kb on + strand, within Ga0059261_0777at 812.215 kb on + strand, within Ga0059261_0777at 812.215 kb on + strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.216 kb on - strand, within Ga0059261_0777at 812.466 kb on - strand, within Ga0059261_0777at 812.545 kb on + strand, within Ga0059261_0777at 812.545 kb on + strand, within Ga0059261_0777at 812.545 kb on + strand, within Ga0059261_0777at 812.546 kb on - strand, within Ga0059261_0777at 812.813 kb on + strand, within Ga0059261_0777at 812.814 kb on - strand, within Ga0059261_0777at 812.814 kb on - strand, within Ga0059261_0777at 812.989 kb on - strandat 812.995 kb on + strandat 812.996 kb on - strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.100 kb on + strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.101 kb on - strandat 813.154 kb on - strand, within Ga0059261_0778at 813.154 kb on - strand, within Ga0059261_0778at 813.254 kb on + strand, within Ga0059261_0778at 813.254 kb on + strand, within Ga0059261_0778at 813.254 kb on + strand, within Ga0059261_0778at 813.255 kb on - strand, within Ga0059261_0778at 813.356 kb on + strandat 813.356 kb on + strand, within Ga0059261_0778at 813.356 kb on + strand, within Ga0059261_0778at 813.356 kb on + strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.385 kb on - strand, within Ga0059261_0778at 813.392 kb on + strand, within Ga0059261_0778at 813.392 kb on + strand, within Ga0059261_0778at 813.495 kb on + strand, within Ga0059261_0778at 813.495 kb on + strand, within Ga0059261_0778at 813.495 kb on + strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.496 kb on - strand, within Ga0059261_0778at 813.592 kb on + strandat 813.592 kb on + strandat 813.592 kb on + strandat 813.592 kb on + strandat 813.592 kb on + strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.593 kb on - strandat 813.657 kb on + strandat 813.657 kb on + strandat 813.657 kb on + strandat 813.658 kb on - strandat 813.658 kb on - strandat 813.668 kb on + strandat 813.669 kb on - strandat 813.669 kb on - strandat 813.694 kb on + strandat 813.901 kb on + strand, within Ga0059261_0779at 813.901 kb on + strand, within Ga0059261_0779at 813.901 kb on + strand, within Ga0059261_0779at 813.902 kb on - strand, within Ga0059261_0779at 813.902 kb on - strand, within Ga0059261_0779at 813.970 kb on + strand, within Ga0059261_0779at 813.970 kb on + strand, within Ga0059261_0779at 813.970 kb on + strand, within Ga0059261_0779at 813.971 kb on - strand, within Ga0059261_0779at 813.971 kb on - strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.022 kb on + strand, within Ga0059261_0779at 814.023 kb on - strand, within Ga0059261_0779at 814.033 kb on + strand, within Ga0059261_0779at 814.033 kb on + strand, within Ga0059261_0779at 814.033 kb on + strand, within Ga0059261_0779at 814.034 kb on - strand, within Ga0059261_0779at 814.034 kb on - strand, within Ga0059261_0779at 814.124 kb on + strand, within Ga0059261_0779at 814.125 kb on - strand, within Ga0059261_0779at 814.125 kb on - strandat 814.235 kb on + strand, within Ga0059261_0779at 814.235 kb on + strand, within Ga0059261_0779at 814.235 kb on + strand, within Ga0059261_0779at 814.235 kb on + strand, within Ga0059261_0779at 814.235 kb on + strand, within Ga0059261_0779at 814.236 kb on - strand, within Ga0059261_0779at 814.236 kb on - strand, within Ga0059261_0779at 814.236 kb on - strand, within Ga0059261_0779at 814.236 kb on - strand, within Ga0059261_0779at 814.236 kb on - strand, within Ga0059261_0779at 814.446 kb on + strand, within Ga0059261_0779at 814.447 kb on - strand, within Ga0059261_0779at 814.447 kb on - strand, within Ga0059261_0779at 814.519 kb on - strand, within Ga0059261_0779at 814.519 kb on - strand, within Ga0059261_0779at 814.541 kb on + strandat 814.541 kb on + strandat 814.541 kb on + strandat 814.541 kb on + strandat 814.541 kb on + strandat 814.541 kb on + strandat 814.541 kb on + strandat 814.542 kb on - strandat 814.542 kb on - strandat 814.542 kb on - strandat 814.542 kb on - strandat 814.542 kb on - strandat 814.542 kb on - strandat 814.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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812,161 + Ga0059261_0777 0.18 +0.3
812,161 + Ga0059261_0777 0.18 -0.2
812,161 + Ga0059261_0777 0.18 -0.0
812,215 + Ga0059261_0777 0.23 -0.6
812,215 + Ga0059261_0777 0.23 -1.0
812,215 + Ga0059261_0777 0.23 -1.7
812,216 - Ga0059261_0777 0.23 -0.1
812,216 - Ga0059261_0777 0.23 -1.3
812,216 - Ga0059261_0777 0.23 -0.0
812,216 - Ga0059261_0777 0.23 -1.6
812,216 - Ga0059261_0777 0.23 -0.7
812,466 - Ga0059261_0777 0.46 -2.1
812,545 + Ga0059261_0777 0.53 -0.6
812,545 + Ga0059261_0777 0.53 -0.4
812,545 + Ga0059261_0777 0.53 -2.0
812,546 - Ga0059261_0777 0.53 -0.5
812,813 + Ga0059261_0777 0.78 -1.3
812,814 - Ga0059261_0777 0.78 +0.5
812,814 - Ga0059261_0777 0.78 -1.0
812,989 - +0.1
812,995 + -0.3
812,996 - -1.2
813,100 + -0.4
813,100 + +0.4
813,100 + -0.2
813,100 + -0.0
813,100 + -0.0
813,100 + -0.4
813,100 + +0.4
813,100 + -0.6
813,100 + +0.1
813,100 + -0.3
813,100 + -0.0
813,101 - +0.6
813,101 - +0.2
813,101 - +0.4
813,101 - +0.1
813,101 - +0.6
813,101 - -0.3
813,101 - +0.0
813,101 - -0.4
813,101 - -1.1
813,101 - +0.3
813,154 - Ga0059261_0778 0.19 +1.0
813,154 - Ga0059261_0778 0.19 -0.3
813,254 + Ga0059261_0778 0.38 +0.1
813,254 + Ga0059261_0778 0.38 +0.7
813,254 + Ga0059261_0778 0.38 +0.7
813,255 - Ga0059261_0778 0.38 -0.2
813,356 + +0.6
813,356 + Ga0059261_0778 0.57 -0.7
813,356 + Ga0059261_0778 0.57 +0.6
813,356 + Ga0059261_0778 0.57 +1.1
813,385 - Ga0059261_0778 0.62 -1.6
813,385 - Ga0059261_0778 0.62 +0.6
813,385 - Ga0059261_0778 0.62 -0.7
813,385 - Ga0059261_0778 0.62 +1.3
813,385 - Ga0059261_0778 0.62 -2.1
813,385 - Ga0059261_0778 0.62 -0.0
813,392 + Ga0059261_0778 0.63 +1.0
813,392 + Ga0059261_0778 0.63 -0.0
813,495 + Ga0059261_0778 0.83 -0.2
813,495 + Ga0059261_0778 0.83 -0.5
813,495 + Ga0059261_0778 0.83 +0.4
813,496 - Ga0059261_0778 0.83 +0.2
813,496 - Ga0059261_0778 0.83 +0.7
813,496 - Ga0059261_0778 0.83 +0.3
813,496 - Ga0059261_0778 0.83 -0.6
813,496 - Ga0059261_0778 0.83 +1.3
813,592 + -0.1
813,592 + -0.6
813,592 + +0.6
813,592 + -0.2
813,592 + -0.6
813,593 - -0.4
813,593 - +0.1
813,593 - +0.9
813,593 - -0.2
813,593 - +0.5
813,593 - +0.3
813,657 + -1.7
813,657 + -0.2
813,657 + +1.2
813,658 - -0.9
813,658 - +0.6
813,668 + -0.2
813,669 - +0.5
813,669 - -0.6
813,694 + -0.2
813,901 + Ga0059261_0779 0.20 -0.2
813,901 + Ga0059261_0779 0.20 -0.2
813,901 + Ga0059261_0779 0.20 +0.8
813,902 - Ga0059261_0779 0.20 -1.8
813,902 - Ga0059261_0779 0.20 -0.2
813,970 + Ga0059261_0779 0.27 -1.4
813,970 + Ga0059261_0779 0.27 -0.0
813,970 + Ga0059261_0779 0.27 +0.1
813,971 - Ga0059261_0779 0.28 +0.2
813,971 - Ga0059261_0779 0.28 -0.7
814,022 + Ga0059261_0779 0.33 +0.4
814,022 + Ga0059261_0779 0.33 +0.3
814,022 + Ga0059261_0779 0.33 -0.1
814,022 + Ga0059261_0779 0.33 -1.0
814,022 + Ga0059261_0779 0.33 +0.9
814,022 + Ga0059261_0779 0.33 +0.5
814,023 - Ga0059261_0779 0.33 -0.6
814,033 + Ga0059261_0779 0.34 +0.9
814,033 + Ga0059261_0779 0.34 +0.0
814,033 + Ga0059261_0779 0.34 +0.9
814,034 - Ga0059261_0779 0.35 +1.0
814,034 - Ga0059261_0779 0.35 -0.5
814,124 + Ga0059261_0779 0.45 +0.2
814,125 - Ga0059261_0779 0.45 -0.1
814,125 - +1.6
814,235 + Ga0059261_0779 0.57 +0.0
814,235 + Ga0059261_0779 0.57 +0.0
814,235 + Ga0059261_0779 0.57 -1.0
814,235 + Ga0059261_0779 0.57 -0.2
814,235 + Ga0059261_0779 0.57 -0.8
814,236 - Ga0059261_0779 0.57 -1.3
814,236 - Ga0059261_0779 0.57 +1.4
814,236 - Ga0059261_0779 0.57 -0.7
814,236 - Ga0059261_0779 0.57 -0.4
814,236 - Ga0059261_0779 0.57 -0.2
814,446 + Ga0059261_0779 0.81 +0.2
814,447 - Ga0059261_0779 0.81 +0.3
814,447 - Ga0059261_0779 0.81 +1.4
814,519 - Ga0059261_0779 0.89 +0.2
814,519 - Ga0059261_0779 0.89 -0.9
814,541 + -0.2
814,541 + -0.7
814,541 + +0.7
814,541 + -1.4
814,541 + -1.2
814,541 + -1.2
814,541 + -0.2
814,542 - +0.6
814,542 - +0.4
814,542 - +0.2
814,542 - -1.0
814,542 - +0.8
814,542 - -1.4
814,542 - +0.6

Or see this region's nucleotide sequence