Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0556

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0555 and Ga0059261_0556 overlap by 4 nucleotidesGa0059261_0556 and Ga0059261_0557 overlap by 4 nucleotidesGa0059261_0557 and Ga0059261_0558 are separated by 38 nucleotides Ga0059261_0555: Ga0059261_0555 - transcriptional regulator, LacI family, at 569,590 to 570,588 _0555 Ga0059261_0556: Ga0059261_0556 - Signal transduction histidine kinase, at 570,585 to 571,946 _0556 Ga0059261_0557: Ga0059261_0557 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 571,943 to 572,680 _0557 Ga0059261_0558: Ga0059261_0558 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 572,719 to 574,119 _0558 Position (kb) 570 571 572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 569.722 kb on + strandat 569.722 kb on + strand, within Ga0059261_0555at 569.723 kb on - strand, within Ga0059261_0555at 569.857 kb on + strand, within Ga0059261_0555at 569.857 kb on + strand, within Ga0059261_0555at 569.857 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.035 kb on - strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strandat 570.062 kb on + strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strandat 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.247 kb on + strand, within Ga0059261_0555at 570.247 kb on + strand, within Ga0059261_0555at 570.248 kb on - strand, within Ga0059261_0555at 570.248 kb on - strand, within Ga0059261_0555at 570.248 kb on - strand, within Ga0059261_0555at 570.684 kb on - strandat 570.848 kb on - strand, within Ga0059261_0556at 570.848 kb on - strand, within Ga0059261_0556at 570.848 kb on - strand, within Ga0059261_0556at 570.909 kb on + strand, within Ga0059261_0556at 571.811 kb on - strandat 571.824 kb on + strandat 571.824 kb on + strandat 571.824 kb on + strandat 571.825 kb on - strandat 571.825 kb on - strandat 571.825 kb on - strandat 571.868 kb on + strandat 571.869 kb on - strandat 571.974 kb on + strandat 571.974 kb on + strandat 571.975 kb on - strandat 571.975 kb on - strandat 571.975 kb on - strandat 572.349 kb on + strand, within Ga0059261_0557at 572.349 kb on + strand, within Ga0059261_0557at 572.349 kb on + strand, within Ga0059261_0557at 572.349 kb on + strand, within Ga0059261_0557at 572.349 kb on + strand, within Ga0059261_0557at 572.350 kb on - strand, within Ga0059261_0557at 572.350 kb on - strand, within Ga0059261_0557at 572.350 kb on - strand, within Ga0059261_0557at 572.568 kb on + strand, within Ga0059261_0557at 572.568 kb on + strand, within Ga0059261_0557at 572.568 kb on + strand, within Ga0059261_0557at 572.569 kb on - strandat 572.569 kb on - strand, within Ga0059261_0557at 572.685 kb on + strandat 572.686 kb on - strandat 572.686 kb on - strandat 572.687 kb on + strandat 572.688 kb on - strandat 572.688 kb on - strandat 572.688 kb on - strandat 572.751 kb on - strandat 572.760 kb on + strandat 572.813 kb on + strandat 572.813 kb on + strandat 572.813 kb on + strandat 572.814 kb on - strandat 572.814 kb on - strandat 572.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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569,722 + -0.5
569,722 + Ga0059261_0555 0.13 -2.0
569,723 - Ga0059261_0555 0.13 -0.5
569,857 + Ga0059261_0555 0.27 -1.0
569,857 + Ga0059261_0555 0.27 -2.4
569,857 + Ga0059261_0555 0.27 -2.0
569,908 + Ga0059261_0555 0.32 -0.0
569,908 + Ga0059261_0555 0.32 -1.3
569,908 + Ga0059261_0555 0.32 -4.6
569,908 + Ga0059261_0555 0.32 -0.9
569,909 - Ga0059261_0555 0.32 -0.0
569,909 - Ga0059261_0555 0.32 +1.0
569,909 - Ga0059261_0555 0.32 -1.4
569,909 - Ga0059261_0555 0.32 -1.4
570,034 + Ga0059261_0555 0.44 -0.0
570,034 + Ga0059261_0555 0.44 -1.0
570,034 + Ga0059261_0555 0.44 -1.4
570,034 + Ga0059261_0555 0.44 -1.6
570,035 - Ga0059261_0555 0.45 -1.4
570,062 + Ga0059261_0555 0.47 +1.3
570,062 + Ga0059261_0555 0.47 -2.7
570,062 + Ga0059261_0555 0.47 -1.0
570,062 + Ga0059261_0555 0.47 -0.9
570,062 + Ga0059261_0555 0.47 -1.6
570,062 + Ga0059261_0555 0.47 -1.3
570,062 + Ga0059261_0555 0.47 -2.0
570,062 + Ga0059261_0555 0.47 -0.9
570,062 + Ga0059261_0555 0.47 -1.1
570,062 + Ga0059261_0555 0.47 -0.4
570,062 + +1.5
570,062 + Ga0059261_0555 0.47 -2.3
570,063 - Ga0059261_0555 0.47 +1.5
570,063 - Ga0059261_0555 0.47 -0.8
570,063 - Ga0059261_0555 0.47 -1.4
570,063 - Ga0059261_0555 0.47 -2.9
570,063 - Ga0059261_0555 0.47 -2.2
570,063 - Ga0059261_0555 0.47 -1.5
570,063 - Ga0059261_0555 0.47 +0.4
570,063 - Ga0059261_0555 0.47 -2.6
570,063 - -0.0
570,063 - Ga0059261_0555 0.47 -1.6
570,063 - Ga0059261_0555 0.47 -1.4
570,066 + Ga0059261_0555 0.48 -3.2
570,066 + Ga0059261_0555 0.48 -1.2
570,066 + Ga0059261_0555 0.48 -4.1
570,066 + Ga0059261_0555 0.48 -0.3
570,066 + Ga0059261_0555 0.48 -2.2
570,066 + Ga0059261_0555 0.48 -0.6
570,066 + Ga0059261_0555 0.48 -1.3
570,066 + Ga0059261_0555 0.48 +0.5
570,066 + Ga0059261_0555 0.48 -0.3
570,067 - Ga0059261_0555 0.48 -2.5
570,067 - Ga0059261_0555 0.48 -2.0
570,067 - Ga0059261_0555 0.48 -2.1
570,067 - Ga0059261_0555 0.48 -3.6
570,067 - Ga0059261_0555 0.48 -2.8
570,067 - Ga0059261_0555 0.48 -1.6
570,247 + Ga0059261_0555 0.66 -1.1
570,247 + Ga0059261_0555 0.66 -1.9
570,248 - Ga0059261_0555 0.66 -2.6
570,248 - Ga0059261_0555 0.66 -1.0
570,248 - Ga0059261_0555 0.66 -0.9
570,684 - -1.0
570,848 - Ga0059261_0556 0.19 +0.6
570,848 - Ga0059261_0556 0.19 +0.1
570,848 - Ga0059261_0556 0.19 +0.1
570,909 + Ga0059261_0556 0.24 +0.3
571,811 - -0.6
571,824 + -0.0
571,824 + +0.4
571,824 + +0.2
571,825 - +0.3
571,825 - -0.1
571,825 - +0.1
571,868 + -0.0
571,869 - -1.5
571,974 + -0.8
571,974 + -1.3
571,975 - -0.0
571,975 - +0.5
571,975 - -0.0
572,349 + Ga0059261_0557 0.55 -0.0
572,349 + Ga0059261_0557 0.55 -0.1
572,349 + Ga0059261_0557 0.55 +2.6
572,349 + Ga0059261_0557 0.55 -1.5
572,349 + Ga0059261_0557 0.55 +0.3
572,350 - Ga0059261_0557 0.55 +0.3
572,350 - Ga0059261_0557 0.55 +0.4
572,350 - Ga0059261_0557 0.55 -0.7
572,568 + Ga0059261_0557 0.85 -0.4
572,568 + Ga0059261_0557 0.85 -1.4
572,568 + Ga0059261_0557 0.85 -0.5
572,569 - -1.0
572,569 - Ga0059261_0557 0.85 -0.5
572,685 + +1.1
572,686 - +0.4
572,686 - -1.3
572,687 + -1.4
572,688 - +0.4
572,688 - +0.5
572,688 - -1.1
572,751 - -0.4
572,760 + +0.6
572,813 + -0.0
572,813 + +0.0
572,813 + -1.9
572,814 - -0.5
572,814 - +1.1
572,814 - +0.1

Or see this region's nucleotide sequence