Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0536

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0534 and Ga0059261_0535 are separated by 63 nucleotidesGa0059261_0535 and Ga0059261_0536 are separated by 57 nucleotidesGa0059261_0536 and Ga0059261_0537 are separated by 50 nucleotides Ga0059261_0534: Ga0059261_0534 - TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain, at 536,348 to 539,530 _0534 Ga0059261_0535: Ga0059261_0535 - PAP2 superfamily, at 539,594 to 540,409 _0535 Ga0059261_0536: Ga0059261_0536 - transcriptional regulator, TetR family, at 540,467 to 541,063 _0536 Ga0059261_0537: Ga0059261_0537 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 541,114 to 542,295 _0537 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1 2at 539.480 kb on + strandat 539.480 kb on + strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.498 kb on + strandat 539.504 kb on + strandat 539.709 kb on + strand, within Ga0059261_0535at 539.714 kb on + strand, within Ga0059261_0535at 539.714 kb on + strand, within Ga0059261_0535at 539.714 kb on + strand, within Ga0059261_0535at 539.715 kb on - strand, within Ga0059261_0535at 539.715 kb on - strand, within Ga0059261_0535at 539.715 kb on - strand, within Ga0059261_0535at 539.739 kb on - strand, within Ga0059261_0535at 539.873 kb on + strand, within Ga0059261_0535at 540.014 kb on + strand, within Ga0059261_0535at 540.023 kb on + strand, within Ga0059261_0535at 540.023 kb on + strand, within Ga0059261_0535at 540.024 kb on - strand, within Ga0059261_0535at 540.096 kb on - strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.195 kb on - strand, within Ga0059261_0535at 540.222 kb on - strand, within Ga0059261_0535at 540.333 kb on - strandat 540.333 kb on - strandat 540.666 kb on + strand, within Ga0059261_0536at 540.666 kb on + strand, within Ga0059261_0536at 540.666 kb on + strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.824 kb on + strand, within Ga0059261_0536at 540.870 kb on + strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 541.186 kb on + strandat 541.186 kb on + strandat 541.187 kb on - strandat 541.187 kb on - strandat 541.187 kb on - strandat 541.432 kb on + strand, within Ga0059261_0537at 541.433 kb on - strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.447 kb on + strand, within Ga0059261_0537at 541.448 kb on - strand, within Ga0059261_0537at 541.448 kb on - strand, within Ga0059261_0537at 541.493 kb on - strand, within Ga0059261_0537at 541.493 kb on - strand, within Ga0059261_0537at 541.616 kb on - strand, within Ga0059261_0537at 541.616 kb on - strand, within Ga0059261_0537at 541.718 kb on - strand, within Ga0059261_0537at 541.718 kb on - strand, within Ga0059261_0537at 541.780 kb on + strand, within Ga0059261_0537at 541.780 kb on + strand, within Ga0059261_0537at 541.822 kb on + strand, within Ga0059261_0537at 541.822 kb on + strand, within Ga0059261_0537at 541.864 kb on + strand, within Ga0059261_0537at 541.865 kb on - strand, within Ga0059261_0537at 541.865 kb on - strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.924 kb on + strand, within Ga0059261_0537at 541.927 kb on + strand, within Ga0059261_0537at 541.928 kb on - strand, within Ga0059261_0537at 541.928 kb on - strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.960 kb on + strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537at 541.961 kb on - strand, within Ga0059261_0537

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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539,480 + +0.2
539,480 + -0.1
539,481 - -0.9
539,481 - -0.8
539,481 - +0.1
539,481 - +0.2
539,481 - +0.5
539,498 + +0.5
539,504 + +0.0
539,709 + Ga0059261_0535 0.14 -0.9
539,714 + Ga0059261_0535 0.15 +0.2
539,714 + Ga0059261_0535 0.15 +0.2
539,714 + Ga0059261_0535 0.15 +0.1
539,715 - Ga0059261_0535 0.15 +0.2
539,715 - Ga0059261_0535 0.15 -0.0
539,715 - Ga0059261_0535 0.15 +0.5
539,739 - Ga0059261_0535 0.18 -0.3
539,873 + Ga0059261_0535 0.34 -0.9
540,014 + Ga0059261_0535 0.51 +0.1
540,023 + Ga0059261_0535 0.53 +0.4
540,023 + Ga0059261_0535 0.53 -0.2
540,024 - Ga0059261_0535 0.53 -0.8
540,096 - Ga0059261_0535 0.62 +0.5
540,116 + Ga0059261_0535 0.64 -0.0
540,116 + Ga0059261_0535 0.64 -0.0
540,116 + Ga0059261_0535 0.64 -0.7
540,117 - Ga0059261_0535 0.64 +0.1
540,117 - Ga0059261_0535 0.64 +0.7
540,117 - Ga0059261_0535 0.64 +1.2
540,117 - Ga0059261_0535 0.64 -0.6
540,117 - Ga0059261_0535 0.64 +0.0
540,194 + Ga0059261_0535 0.74 +0.5
540,194 + Ga0059261_0535 0.74 -0.2
540,194 + Ga0059261_0535 0.74 +0.1
540,194 + Ga0059261_0535 0.74 -0.8
540,194 + Ga0059261_0535 0.74 +0.1
540,195 - Ga0059261_0535 0.74 +0.8
540,222 - Ga0059261_0535 0.77 +0.1
540,333 - -0.5
540,333 - +0.4
540,666 + Ga0059261_0536 0.33 -1.3
540,666 + Ga0059261_0536 0.33 +2.1
540,666 + Ga0059261_0536 0.33 -0.0
540,667 - Ga0059261_0536 0.34 +0.3
540,667 - Ga0059261_0536 0.34 -2.0
540,667 - Ga0059261_0536 0.34 -2.5
540,667 - Ga0059261_0536 0.34 -1.0
540,667 - Ga0059261_0536 0.34 +0.5
540,783 + Ga0059261_0536 0.53 -1.3
540,783 + Ga0059261_0536 0.53 -0.6
540,783 + Ga0059261_0536 0.53 -1.1
540,784 - Ga0059261_0536 0.53 -1.0
540,784 - Ga0059261_0536 0.53 +0.8
540,784 - Ga0059261_0536 0.53 -0.2
540,784 - Ga0059261_0536 0.53 +0.2
540,784 - Ga0059261_0536 0.53 +0.8
540,784 - Ga0059261_0536 0.53 +0.8
540,784 - Ga0059261_0536 0.53 -0.6
540,824 + Ga0059261_0536 0.60 -0.8
540,870 + Ga0059261_0536 0.68 -0.7
540,871 - Ga0059261_0536 0.68 -0.7
540,871 - Ga0059261_0536 0.68 -0.3
540,871 - Ga0059261_0536 0.68 +0.0
540,871 - Ga0059261_0536 0.68 -0.3
541,186 + -0.4
541,186 + -0.1
541,187 - +0.3
541,187 - -0.3
541,187 - +0.2
541,432 + Ga0059261_0537 0.27 -0.7
541,433 - Ga0059261_0537 0.27 -0.4
541,447 + Ga0059261_0537 0.28 -0.1
541,447 + Ga0059261_0537 0.28 -0.0
541,447 + Ga0059261_0537 0.28 +0.2
541,447 + Ga0059261_0537 0.28 +0.2
541,448 - Ga0059261_0537 0.28 -0.3
541,448 - Ga0059261_0537 0.28 +0.0
541,493 - Ga0059261_0537 0.32 +0.5
541,493 - Ga0059261_0537 0.32 -1.8
541,616 - Ga0059261_0537 0.42 +0.2
541,616 - Ga0059261_0537 0.42 -1.0
541,718 - Ga0059261_0537 0.51 -2.0
541,718 - Ga0059261_0537 0.51 +1.0
541,780 + Ga0059261_0537 0.56 +0.2
541,780 + Ga0059261_0537 0.56 -0.3
541,822 + Ga0059261_0537 0.60 +1.0
541,822 + Ga0059261_0537 0.60 +0.2
541,864 + Ga0059261_0537 0.63 -0.3
541,865 - Ga0059261_0537 0.64 -0.0
541,865 - Ga0059261_0537 0.64 -0.1
541,924 + Ga0059261_0537 0.69 +0.5
541,924 + Ga0059261_0537 0.69 -1.6
541,924 + Ga0059261_0537 0.69 +0.0
541,924 + Ga0059261_0537 0.69 +0.3
541,924 + Ga0059261_0537 0.69 -1.2
541,927 + Ga0059261_0537 0.69 -0.5
541,928 - Ga0059261_0537 0.69 +0.8
541,928 - Ga0059261_0537 0.69 +0.4
541,960 + Ga0059261_0537 0.72 -0.4
541,960 + Ga0059261_0537 0.72 -0.9
541,960 + Ga0059261_0537 0.72 -0.6
541,960 + Ga0059261_0537 0.72 -0.0
541,960 + Ga0059261_0537 0.72 +0.8
541,960 + Ga0059261_0537 0.72 +1.3
541,960 + Ga0059261_0537 0.72 +0.3
541,960 + Ga0059261_0537 0.72 -0.8
541,961 - Ga0059261_0537 0.72 +0.2
541,961 - Ga0059261_0537 0.72 +0.2
541,961 - Ga0059261_0537 0.72 -0.8
541,961 - Ga0059261_0537 0.72 +0.9
541,961 - Ga0059261_0537 0.72 -1.5
541,961 - Ga0059261_0537 0.72 +0.3
541,961 - Ga0059261_0537 0.72 +1.1
541,961 - Ga0059261_0537 0.72 +0.5
541,961 - Ga0059261_0537 0.72 +0.8

Or see this region's nucleotide sequence