Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0226

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0225 and Ga0059261_0226 are separated by 9 nucleotidesGa0059261_0226 and Ga0059261_0227 overlap by 4 nucleotides Ga0059261_0225: Ga0059261_0225 - polyphosphate kinase 1, at 214,871 to 217,045 _0225 Ga0059261_0226: Ga0059261_0226 - Bacterial dnaA protein, at 217,055 to 217,678 _0226 Ga0059261_0227: Ga0059261_0227 - hypothetical protein, at 217,675 to 218,949 _0227 Position (kb) 217 218Strain fitness (log2 ratio) -1 0 1 2 3 4at 216.069 kb on + strand, within Ga0059261_0225at 216.069 kb on + strand, within Ga0059261_0225at 216.070 kb on - strand, within Ga0059261_0225at 216.276 kb on + strand, within Ga0059261_0225at 216.277 kb on - strand, within Ga0059261_0225at 216.277 kb on - strand, within Ga0059261_0225at 216.277 kb on - strand, within Ga0059261_0225at 216.414 kb on + strand, within Ga0059261_0225at 216.414 kb on + strand, within Ga0059261_0225at 216.414 kb on + strand, within Ga0059261_0225at 216.415 kb on - strand, within Ga0059261_0225at 216.975 kb on + strandat 216.976 kb on - strandat 216.976 kb on - strandat 218.115 kb on - strand, within Ga0059261_0227at 218.115 kb on - strandat 218.115 kb on - strand, within Ga0059261_0227at 218.406 kb on - strand, within Ga0059261_0227at 218.406 kb on - strand, within Ga0059261_0227

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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216,069 + Ga0059261_0225 0.55 +1.4
216,069 + Ga0059261_0225 0.55 +0.3
216,070 - Ga0059261_0225 0.55 +1.7
216,276 + Ga0059261_0225 0.65 +1.3
216,277 - Ga0059261_0225 0.65 +1.4
216,277 - Ga0059261_0225 0.65 +1.5
216,277 - Ga0059261_0225 0.65 +0.5
216,414 + Ga0059261_0225 0.71 +3.8
216,414 + Ga0059261_0225 0.71 +1.3
216,414 + Ga0059261_0225 0.71 +1.5
216,415 - Ga0059261_0225 0.71 +1.2
216,975 + -0.3
216,976 - +0.6
216,976 - +0.1
218,115 - Ga0059261_0227 0.35 +0.4
218,115 - +0.6
218,115 - Ga0059261_0227 0.35 -1.3
218,406 - Ga0059261_0227 0.57 +0.0
218,406 - Ga0059261_0227 0.57 +0.3

Or see this region's nucleotide sequence