Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29910

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29905 and AO356_29910 are separated by 293 nucleotidesAO356_29910 and AO356_29915 are separated by 280 nucleotides AO356_29905: AO356_29905 - hypothetical protein, at 6,955,136 to 6,955,807 _29905 AO356_29910: AO356_29910 - hypothetical protein, at 6,956,101 to 6,956,556 _29910 AO356_29915: AO356_29915 - hypothetical protein, at 6,956,837 to 6,957,559 _29915 Position (kb) 6956 6957Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6955.103 kb on - strandat 6955.110 kb on + strandat 6955.113 kb on + strandat 6955.114 kb on - strandat 6955.233 kb on + strand, within AO356_29905at 6955.234 kb on - strand, within AO356_29905at 6955.254 kb on + strand, within AO356_29905at 6955.254 kb on + strand, within AO356_29905at 6955.254 kb on + strand, within AO356_29905at 6955.260 kb on + strand, within AO356_29905at 6955.260 kb on + strand, within AO356_29905at 6955.260 kb on + strand, within AO356_29905at 6955.261 kb on - strand, within AO356_29905at 6955.261 kb on - strand, within AO356_29905at 6955.273 kb on + strand, within AO356_29905at 6955.273 kb on + strand, within AO356_29905at 6955.274 kb on - strand, within AO356_29905at 6955.305 kb on + strand, within AO356_29905at 6955.305 kb on + strand, within AO356_29905at 6955.306 kb on - strand, within AO356_29905at 6955.306 kb on - strand, within AO356_29905at 6955.340 kb on - strand, within AO356_29905at 6955.402 kb on - strand, within AO356_29905at 6955.402 kb on - strand, within AO356_29905at 6955.402 kb on - strand, within AO356_29905at 6955.527 kb on + strand, within AO356_29905at 6955.528 kb on - strand, within AO356_29905at 6955.528 kb on - strand, within AO356_29905at 6955.546 kb on - strand, within AO356_29905at 6955.557 kb on + strand, within AO356_29905at 6955.557 kb on + strand, within AO356_29905at 6955.557 kb on + strand, within AO356_29905at 6955.558 kb on - strand, within AO356_29905at 6955.561 kb on - strand, within AO356_29905at 6955.610 kb on - strand, within AO356_29905at 6955.686 kb on + strand, within AO356_29905at 6955.687 kb on - strand, within AO356_29905at 6955.687 kb on - strand, within AO356_29905at 6955.690 kb on + strand, within AO356_29905at 6955.690 kb on + strand, within AO356_29905at 6955.720 kb on + strand, within AO356_29905at 6955.721 kb on - strand, within AO356_29905at 6955.721 kb on - strand, within AO356_29905at 6955.769 kb on + strandat 6955.827 kb on + strandat 6955.838 kb on + strandat 6955.927 kb on + strandat 6955.927 kb on + strandat 6955.927 kb on + strandat 6955.927 kb on + strandat 6955.928 kb on - strandat 6955.943 kb on - strandat 6955.943 kb on - strandat 6955.982 kb on + strandat 6955.982 kb on + strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6956.102 kb on + strandat 6956.102 kb on + strandat 6956.103 kb on - strandat 6956.107 kb on + strandat 6956.115 kb on - strandat 6956.176 kb on - strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.195 kb on - strand, within AO356_29910at 6956.195 kb on - strand, within AO356_29910at 6956.211 kb on - strand, within AO356_29910at 6956.306 kb on + strand, within AO356_29910at 6956.311 kb on + strand, within AO356_29910at 6956.312 kb on - strand, within AO356_29910at 6956.312 kb on - strand, within AO356_29910at 6956.533 kb on + strandat 6956.534 kb on - strandat 6956.534 kb on - strandat 6956.534 kb on - strandat 6956.608 kb on + strandat 6956.608 kb on + strandat 6956.608 kb on + strandat 6956.608 kb on + strandat 6956.609 kb on - strandat 6956.609 kb on - strandat 6956.609 kb on - strandat 6956.609 kb on - strandat 6956.645 kb on + strandat 6956.645 kb on + strandat 6956.656 kb on + strandat 6956.681 kb on - strandat 6956.714 kb on - strandat 6956.760 kb on - strandat 6956.790 kb on + strandat 6956.859 kb on + strandat 6956.972 kb on + strand, within AO356_29915at 6956.973 kb on - strand, within AO356_29915at 6957.299 kb on + strand, within AO356_29915at 6957.337 kb on + strand, within AO356_29915at 6957.365 kb on + strand, within AO356_29915at 6957.365 kb on + strand, within AO356_29915at 6957.365 kb on + strand, within AO356_29915at 6957.366 kb on - strand, within AO356_29915at 6957.366 kb on - strand, within AO356_29915at 6957.414 kb on + strand, within AO356_29915at 6957.415 kb on - strand, within AO356_29915at 6957.415 kb on - strand, within AO356_29915at 6957.529 kb on - strandat 6957.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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6,955,103 - +0.6
6,955,110 + -0.2
6,955,113 + +0.6
6,955,114 - +0.1
6,955,233 + AO356_29905 0.14 +0.3
6,955,234 - AO356_29905 0.15 -0.6
6,955,254 + AO356_29905 0.18 -0.1
6,955,254 + AO356_29905 0.18 -0.6
6,955,254 + AO356_29905 0.18 -0.6
6,955,260 + AO356_29905 0.18 -2.2
6,955,260 + AO356_29905 0.18 +0.4
6,955,260 + AO356_29905 0.18 -0.7
6,955,261 - AO356_29905 0.19 -0.0
6,955,261 - AO356_29905 0.19 -0.1
6,955,273 + AO356_29905 0.20 -0.7
6,955,273 + AO356_29905 0.20 -0.2
6,955,274 - AO356_29905 0.21 -0.2
6,955,305 + AO356_29905 0.25 +0.2
6,955,305 + AO356_29905 0.25 +1.3
6,955,306 - AO356_29905 0.25 +0.7
6,955,306 - AO356_29905 0.25 +0.8
6,955,340 - AO356_29905 0.30 -0.9
6,955,402 - AO356_29905 0.40 -0.2
6,955,402 - AO356_29905 0.40 +1.4
6,955,402 - AO356_29905 0.40 +1.1
6,955,527 + AO356_29905 0.58 +1.6
6,955,528 - AO356_29905 0.58 -0.1
6,955,528 - AO356_29905 0.58 -0.4
6,955,546 - AO356_29905 0.61 +0.1
6,955,557 + AO356_29905 0.63 -0.7
6,955,557 + AO356_29905 0.63 -0.4
6,955,557 + AO356_29905 0.63 +1.4
6,955,558 - AO356_29905 0.63 -0.2
6,955,561 - AO356_29905 0.63 +0.5
6,955,610 - AO356_29905 0.71 +1.0
6,955,686 + AO356_29905 0.82 +2.4
6,955,687 - AO356_29905 0.82 +0.7
6,955,687 - AO356_29905 0.82 +0.7
6,955,690 + AO356_29905 0.82 -1.4
6,955,690 + AO356_29905 0.82 -0.6
6,955,720 + AO356_29905 0.87 +1.0
6,955,721 - AO356_29905 0.87 -1.0
6,955,721 - AO356_29905 0.87 +0.3
6,955,769 + -0.0
6,955,827 + +0.5
6,955,838 + +0.2
6,955,927 + -0.6
6,955,927 + +0.4
6,955,927 + +3.0
6,955,927 + +0.4
6,955,928 - -1.2
6,955,943 - +0.3
6,955,943 - -1.2
6,955,982 + -1.2
6,955,982 + +0.7
6,955,983 - +1.2
6,955,983 - +0.4
6,955,983 - +0.7
6,955,983 - +0.3
6,955,983 - +0.8
6,955,983 - +0.0
6,956,102 + +0.7
6,956,102 + -0.6
6,956,103 - -0.1
6,956,107 + -0.6
6,956,115 - +0.0
6,956,176 - AO356_29910 0.16 -0.0
6,956,194 + AO356_29910 0.20 +0.4
6,956,194 + AO356_29910 0.20 +0.5
6,956,194 + AO356_29910 0.20 -0.0
6,956,194 + AO356_29910 0.20 -0.6
6,956,194 + AO356_29910 0.20 +0.0
6,956,194 + AO356_29910 0.20 -0.9
6,956,195 - AO356_29910 0.21 +0.4
6,956,195 - AO356_29910 0.21 +2.4
6,956,211 - AO356_29910 0.24 +0.5
6,956,306 + AO356_29910 0.45 -0.1
6,956,311 + AO356_29910 0.46 -0.0
6,956,312 - AO356_29910 0.46 +0.1
6,956,312 - AO356_29910 0.46 +1.0
6,956,533 + -0.4
6,956,534 - +0.5
6,956,534 - -0.3
6,956,534 - +0.6
6,956,608 + +0.5
6,956,608 + +0.6
6,956,608 + +0.6
6,956,608 + +0.3
6,956,609 - +0.3
6,956,609 - -0.4
6,956,609 - -0.3
6,956,609 - +1.0
6,956,645 + +0.0
6,956,645 + -0.4
6,956,656 + -0.7
6,956,681 - +0.5
6,956,714 - -0.6
6,956,760 - +0.2
6,956,790 + +1.4
6,956,859 + -0.4
6,956,972 + AO356_29915 0.19 +0.6
6,956,973 - AO356_29915 0.19 +0.8
6,957,299 + AO356_29915 0.64 +1.1
6,957,337 + AO356_29915 0.69 +0.1
6,957,365 + AO356_29915 0.73 +1.3
6,957,365 + AO356_29915 0.73 -1.4
6,957,365 + AO356_29915 0.73 -0.8
6,957,366 - AO356_29915 0.73 +0.7
6,957,366 - AO356_29915 0.73 +2.3
6,957,414 + AO356_29915 0.80 +0.1
6,957,415 - AO356_29915 0.80 +0.6
6,957,415 - AO356_29915 0.80 +1.0
6,957,529 - -0.9
6,957,538 + +0.1

Or see this region's nucleotide sequence