Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29265

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29260 and AO356_29265 are separated by 37 nucleotidesAO356_29265 and AO356_29270 are separated by 1 nucleotides AO356_29260: AO356_29260 - nitrate ABC transporter substrate-binding protein, at 6,805,307 to 6,806,332 _29260 AO356_29265: AO356_29265 - sulfonate ABC transporter ATP-binding protein, at 6,806,370 to 6,807,158 _29265 AO356_29270: AO356_29270 - ABC transporter permease, at 6,807,160 to 6,808,032 _29270 Position (kb) 6806 6807 6808Strain fitness (log2 ratio) -1 0 1at 6805.602 kb on - strand, within AO356_29260at 6805.602 kb on - strand, within AO356_29260at 6805.610 kb on - strand, within AO356_29260at 6805.610 kb on - strand, within AO356_29260at 6805.981 kb on + strand, within AO356_29260at 6805.981 kb on + strand, within AO356_29260at 6805.982 kb on - strand, within AO356_29260at 6806.348 kb on + strandat 6807.096 kb on + strandat 6807.105 kb on - strandat 6807.105 kb on - strandat 6807.114 kb on + strandat 6807.249 kb on - strand, within AO356_29270at 6807.252 kb on + strand, within AO356_29270at 6808.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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6,805,602 - AO356_29260 0.29 +0.9
6,805,602 - AO356_29260 0.29 +0.4
6,805,610 - AO356_29260 0.30 +0.0
6,805,610 - AO356_29260 0.30 +0.3
6,805,981 + AO356_29260 0.66 +0.4
6,805,981 + AO356_29260 0.66 +0.3
6,805,982 - AO356_29260 0.66 -0.3
6,806,348 + +0.2
6,807,096 + +0.4
6,807,105 - +0.7
6,807,105 - +1.2
6,807,114 + +0.4
6,807,249 - AO356_29270 0.10 +1.4
6,807,252 + AO356_29270 0.11 +0.2
6,808,011 + +0.9

Or see this region's nucleotide sequence