Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27520 and AO356_27525 are separated by 106 nucleotides AO356_27525 and AO356_27530 are separated by 200 nucleotides AO356_27530 and AO356_27535 are separated by 122 nucleotides
AO356_27520: AO356_27520 - betaine-aldehyde dehydrogenase, at 6,272,395 to 6,273,849
_27520
AO356_27525: AO356_27525 - cytochrome B, at 6,273,956 to 6,274,519
_27525
AO356_27530: AO356_27530 - hypothetical protein, at 6,274,720 to 6,278,454
_27530
AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884
_27535
Position (kb)
6274
6275
6276
6277
6278
6279 Strain fitness (log2 ratio)
-2
-1
0
1 at 6273.808 kb on + strand at 6274.097 kb on + strand, within AO356_27525 at 6274.098 kb on - strand, within AO356_27525 at 6274.098 kb on - strand, within AO356_27525 at 6274.106 kb on + strand, within AO356_27525 at 6274.150 kb on - strand, within AO356_27525 at 6274.221 kb on - strand, within AO356_27525 at 6274.260 kb on - strand, within AO356_27525 at 6274.418 kb on + strand, within AO356_27525 at 6274.475 kb on + strand at 6274.476 kb on - strand at 6274.534 kb on - strand at 6274.608 kb on - strand at 6274.679 kb on + strand at 6274.719 kb on - strand at 6275.098 kb on - strand, within AO356_27530 at 6275.278 kb on + strand, within AO356_27530 at 6275.279 kb on - strand, within AO356_27530 at 6275.279 kb on - strand, within AO356_27530 at 6275.282 kb on + strand, within AO356_27530 at 6275.282 kb on + strand, within AO356_27530 at 6275.282 kb on + strand, within AO356_27530 at 6275.282 kb on + strand, within AO356_27530 at 6275.283 kb on - strand, within AO356_27530 at 6275.283 kb on - strand, within AO356_27530 at 6275.308 kb on - strand, within AO356_27530 at 6275.308 kb on - strand, within AO356_27530 at 6275.866 kb on - strand, within AO356_27530 at 6275.866 kb on - strand, within AO356_27530 at 6275.866 kb on - strand, within AO356_27530 at 6275.866 kb on - strand, within AO356_27530 at 6276.116 kb on + strand, within AO356_27530 at 6276.116 kb on + strand, within AO356_27530 at 6276.117 kb on - strand, within AO356_27530 at 6276.117 kb on - strand, within AO356_27530 at 6276.326 kb on - strand, within AO356_27530 at 6276.326 kb on - strand, within AO356_27530 at 6276.326 kb on - strand, within AO356_27530 at 6276.326 kb on - strand, within AO356_27530 at 6276.326 kb on - strand, within AO356_27530 at 6276.389 kb on - strand, within AO356_27530 at 6276.392 kb on + strand, within AO356_27530 at 6276.392 kb on + strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6276.393 kb on - strand, within AO356_27530 at 6277.226 kb on + strand, within AO356_27530 at 6277.226 kb on + strand, within AO356_27530 at 6277.227 kb on - strand, within AO356_27530 at 6277.391 kb on + strand, within AO356_27530 at 6277.475 kb on + strand, within AO356_27530 at 6277.475 kb on + strand, within AO356_27530 at 6277.475 kb on + strand, within AO356_27530 at 6277.476 kb on - strand, within AO356_27530 at 6277.507 kb on - strand, within AO356_27530 at 6277.759 kb on - strand, within AO356_27530 at 6277.759 kb on - strand, within AO356_27530 at 6277.792 kb on - strand, within AO356_27530 at 6277.793 kb on + strand, within AO356_27530 at 6277.884 kb on - strand, within AO356_27530 at 6278.030 kb on + strand, within AO356_27530 at 6278.030 kb on + strand, within AO356_27530 at 6278.030 kb on + strand, within AO356_27530 at 6278.031 kb on - strand, within AO356_27530 at 6278.031 kb on - strand, within AO356_27530 at 6278.031 kb on - strand, within AO356_27530 at 6278.139 kb on + strand at 6278.289 kb on - strand at 6278.345 kb on + strand at 6278.346 kb on - strand at 6278.370 kb on - strand at 6278.370 kb on - strand at 6278.435 kb on + strand at 6278.502 kb on - strand at 6278.522 kb on + strand at 6278.523 kb on - strand at 6278.578 kb on + strand at 6278.579 kb on - strand at 6278.579 kb on - strand at 6278.649 kb on + strand at 6278.649 kb on + strand at 6278.649 kb on + strand at 6278.655 kb on + strand at 6278.655 kb on + strand at 6278.656 kb on - strand at 6278.674 kb on + strand at 6278.686 kb on + strand at 6278.854 kb on + strand, within AO356_27535 at 6279.413 kb on + strand, within AO356_27535
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 6,273,808 + +0.3 6,274,097 + AO356_27525 0.25 +0.0 6,274,098 - AO356_27525 0.25 +0.2 6,274,098 - AO356_27525 0.25 -0.1 6,274,106 + AO356_27525 0.27 +1.7 6,274,150 - AO356_27525 0.34 +0.3 6,274,221 - AO356_27525 0.47 -0.3 6,274,260 - AO356_27525 0.54 +0.5 6,274,418 + AO356_27525 0.82 +0.0 6,274,475 + -2.4 6,274,476 - -0.8 6,274,534 - +0.9 6,274,608 - -0.9 6,274,679 + +0.2 6,274,719 - +0.1 6,275,098 - AO356_27530 0.10 -0.4 6,275,278 + AO356_27530 0.15 +0.4 6,275,279 - AO356_27530 0.15 -0.4 6,275,279 - AO356_27530 0.15 -0.5 6,275,282 + AO356_27530 0.15 +0.1 6,275,282 + AO356_27530 0.15 +0.6 6,275,282 + AO356_27530 0.15 +1.0 6,275,282 + AO356_27530 0.15 +0.3 6,275,283 - AO356_27530 0.15 -0.7 6,275,283 - AO356_27530 0.15 -0.4 6,275,308 - AO356_27530 0.16 +0.6 6,275,308 - AO356_27530 0.16 +0.6 6,275,866 - AO356_27530 0.31 -0.3 6,275,866 - AO356_27530 0.31 +0.5 6,275,866 - AO356_27530 0.31 -0.1 6,275,866 - AO356_27530 0.31 +0.9 6,276,116 + AO356_27530 0.37 +1.2 6,276,116 + AO356_27530 0.37 +0.3 6,276,117 - AO356_27530 0.37 +0.3 6,276,117 - AO356_27530 0.37 +0.0 6,276,326 - AO356_27530 0.43 +1.3 6,276,326 - AO356_27530 0.43 +1.5 6,276,326 - AO356_27530 0.43 -0.3 6,276,326 - AO356_27530 0.43 -0.5 6,276,326 - AO356_27530 0.43 +0.4 6,276,389 - AO356_27530 0.45 -0.0 6,276,392 + AO356_27530 0.45 -0.7 6,276,392 + AO356_27530 0.45 +0.3 6,276,393 - AO356_27530 0.45 +0.8 6,276,393 - AO356_27530 0.45 -1.0 6,276,393 - AO356_27530 0.45 +0.8 6,276,393 - AO356_27530 0.45 +0.5 6,276,393 - AO356_27530 0.45 +1.0 6,276,393 - AO356_27530 0.45 +0.5 6,276,393 - AO356_27530 0.45 -1.5 6,276,393 - AO356_27530 0.45 +0.6 6,276,393 - AO356_27530 0.45 -0.3 6,277,226 + AO356_27530 0.67 +1.2 6,277,226 + AO356_27530 0.67 +1.5 6,277,227 - AO356_27530 0.67 -0.6 6,277,391 + AO356_27530 0.72 -0.3 6,277,475 + AO356_27530 0.74 +0.2 6,277,475 + AO356_27530 0.74 -0.5 6,277,475 + AO356_27530 0.74 +0.1 6,277,476 - AO356_27530 0.74 -0.1 6,277,507 - AO356_27530 0.75 -1.1 6,277,759 - AO356_27530 0.81 +0.4 6,277,759 - AO356_27530 0.81 +0.1 6,277,792 - AO356_27530 0.82 +0.7 6,277,793 + AO356_27530 0.82 +0.4 6,277,884 - AO356_27530 0.85 -0.7 6,278,030 + AO356_27530 0.89 -0.5 6,278,030 + AO356_27530 0.89 +0.0 6,278,030 + AO356_27530 0.89 +0.1 6,278,031 - AO356_27530 0.89 +0.8 6,278,031 - AO356_27530 0.89 +1.5 6,278,031 - AO356_27530 0.89 -1.8 6,278,139 + -0.5 6,278,289 - -0.4 6,278,345 + +0.2 6,278,346 - -1.0 6,278,370 - +0.4 6,278,370 - -0.6 6,278,435 + +1.1 6,278,502 - -0.0 6,278,522 + +0.0 6,278,523 - -0.0 6,278,578 + +0.5 6,278,579 - -0.2 6,278,579 - +0.0 6,278,649 + +0.3 6,278,649 + -0.4 6,278,649 + -0.1 6,278,655 + -0.5 6,278,655 + -0.6 6,278,656 - +0.0 6,278,674 + +0.2 6,278,686 + +0.4 6,278,854 + AO356_27535 0.21 +0.6 6,279,413 + AO356_27535 0.64 +0.1
Or see this region's nucleotide sequence