Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22765 and AO356_22770 are separated by 388 nucleotides AO356_22770 and AO356_22775 are separated by 202 nucleotides AO356_22775 and AO356_22780 are separated by 109 nucleotides AO356_22780 and AO356_22785 are separated by 30 nucleotides
AO356_22765: AO356_22765 - proline hydroxylase, at 5,083,473 to 5,084,201
_22765
AO356_22770: AO356_22770 - hypothetical protein, at 5,084,590 to 5,084,892
_22770
AO356_22775: AO356_22775 - hypothetical protein, at 5,085,095 to 5,085,445
_22775
AO356_22780: AO356_22780 - hypothetical protein, at 5,085,555 to 5,085,785
_22780
AO356_22785: AO356_22785 - hypothetical protein, at 5,085,816 to 5,086,097
_22785
Position (kb)
5084
5085 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5083.602 kb on + strand, within AO356_22765 at 5083.602 kb on + strand, within AO356_22765 at 5083.602 kb on + strand, within AO356_22765 at 5083.603 kb on - strand, within AO356_22765 at 5083.603 kb on - strand, within AO356_22765 at 5083.753 kb on + strand, within AO356_22765 at 5083.753 kb on + strand, within AO356_22765 at 5083.777 kb on + strand, within AO356_22765 at 5083.792 kb on + strand, within AO356_22765 at 5083.793 kb on - strand, within AO356_22765 at 5083.793 kb on - strand, within AO356_22765 at 5083.931 kb on - strand, within AO356_22765 at 5083.931 kb on - strand, within AO356_22765 at 5083.931 kb on - strand, within AO356_22765 at 5083.981 kb on + strand, within AO356_22765 at 5083.982 kb on - strand, within AO356_22765 at 5083.987 kb on + strand, within AO356_22765 at 5083.988 kb on - strand, within AO356_22765 at 5084.053 kb on + strand, within AO356_22765 at 5084.053 kb on + strand, within AO356_22765 at 5084.054 kb on - strand, within AO356_22765 at 5084.054 kb on - strand, within AO356_22765 at 5084.054 kb on - strand, within AO356_22765 at 5084.055 kb on + strand, within AO356_22765 at 5084.056 kb on - strand, within AO356_22765 at 5084.056 kb on - strand, within AO356_22765 at 5084.056 kb on - strand, within AO356_22765 at 5084.161 kb on - strand at 5084.161 kb on - strand at 5084.161 kb on - strand at 5084.161 kb on - strand at 5084.393 kb on - strand at 5084.402 kb on + strand at 5084.402 kb on + strand at 5084.403 kb on - strand at 5084.530 kb on + strand at 5084.530 kb on + strand at 5084.542 kb on + strand at 5084.542 kb on + strand at 5084.542 kb on + strand at 5084.542 kb on + strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.543 kb on - strand at 5084.759 kb on + strand, within AO356_22770 at 5084.759 kb on + strand, within AO356_22770 at 5084.760 kb on - strand, within AO356_22770 at 5084.760 kb on - strand, within AO356_22770 at 5084.760 kb on - strand, within AO356_22770 at 5084.840 kb on - strand, within AO356_22770 at 5084.974 kb on + strand at 5084.974 kb on + strand at 5084.974 kb on + strand at 5084.974 kb on + strand at 5084.975 kb on - strand at 5084.975 kb on - strand at 5084.975 kb on - strand at 5084.978 kb on - strand at 5085.008 kb on + strand at 5085.080 kb on + strand at 5085.080 kb on + strand at 5085.081 kb on - strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.094 kb on + strand at 5085.095 kb on - strand at 5085.095 kb on - strand at 5085.095 kb on - strand at 5085.209 kb on + strand, within AO356_22775 at 5085.209 kb on + strand, within AO356_22775 at 5085.210 kb on - strand, within AO356_22775 at 5085.210 kb on - strand, within AO356_22775 at 5085.210 kb on - strand, within AO356_22775 at 5085.433 kb on + strand at 5085.433 kb on + strand at 5085.484 kb on - strand at 5085.484 kb on - strand at 5085.596 kb on + strand, within AO356_22780 at 5085.596 kb on + strand, within AO356_22780 at 5085.596 kb on + strand, within AO356_22780 at 5085.596 kb on + strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.597 kb on - strand, within AO356_22780 at 5085.600 kb on + strand, within AO356_22780 at 5085.600 kb on + strand, within AO356_22780 at 5085.600 kb on + strand, within AO356_22780 at 5085.600 kb on + strand, within AO356_22780 at 5085.601 kb on - strand, within AO356_22780 at 5085.601 kb on - strand, within AO356_22780 at 5085.745 kb on + strand, within AO356_22780 at 5085.793 kb on + strand at 5085.802 kb on + strand at 5085.803 kb on - strand at 5085.817 kb on + strand at 5085.817 kb on + strand at 5085.817 kb on + strand at 5085.817 kb on + strand at 5085.818 kb on - strand at 5085.818 kb on - strand at 5085.821 kb on + strand at 5085.821 kb on + strand at 5085.822 kb on - strand at 5085.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 5,083,602 + AO356_22765 0.18 -0.3 5,083,602 + AO356_22765 0.18 +0.2 5,083,602 + AO356_22765 0.18 +0.6 5,083,603 - AO356_22765 0.18 +0.3 5,083,603 - AO356_22765 0.18 +0.3 5,083,753 + AO356_22765 0.38 +0.5 5,083,753 + AO356_22765 0.38 +0.6 5,083,777 + AO356_22765 0.42 -0.3 5,083,792 + AO356_22765 0.44 +1.6 5,083,793 - AO356_22765 0.44 +0.0 5,083,793 - AO356_22765 0.44 +0.4 5,083,931 - AO356_22765 0.63 -0.6 5,083,931 - AO356_22765 0.63 +2.5 5,083,931 - AO356_22765 0.63 -1.3 5,083,981 + AO356_22765 0.70 -0.8 5,083,982 - AO356_22765 0.70 +0.7 5,083,987 + AO356_22765 0.71 +0.3 5,083,988 - AO356_22765 0.71 +0.6 5,084,053 + AO356_22765 0.80 -0.6 5,084,053 + AO356_22765 0.80 +0.2 5,084,054 - AO356_22765 0.80 -0.3 5,084,054 - AO356_22765 0.80 +0.1 5,084,054 - AO356_22765 0.80 -0.4 5,084,055 + AO356_22765 0.80 +0.1 5,084,056 - AO356_22765 0.80 -0.0 5,084,056 - AO356_22765 0.80 +1.7 5,084,056 - AO356_22765 0.80 +0.7 5,084,161 - -0.8 5,084,161 - -0.2 5,084,161 - +0.8 5,084,161 - +0.0 5,084,393 - +1.0 5,084,402 + -0.7 5,084,402 + -0.1 5,084,403 - +1.3 5,084,530 + -0.2 5,084,530 + -0.1 5,084,542 + +1.0 5,084,542 + -0.2 5,084,542 + +0.8 5,084,542 + +0.6 5,084,543 - -2.2 5,084,543 - +0.6 5,084,543 - +0.1 5,084,543 - +0.3 5,084,543 - +0.5 5,084,543 - +0.8 5,084,759 + AO356_22770 0.56 +0.8 5,084,759 + AO356_22770 0.56 +0.1 5,084,760 - AO356_22770 0.56 +0.7 5,084,760 - AO356_22770 0.56 +0.1 5,084,760 - AO356_22770 0.56 +0.2 5,084,840 - AO356_22770 0.83 +0.3 5,084,974 + -0.1 5,084,974 + -0.3 5,084,974 + -0.1 5,084,974 + -0.2 5,084,975 - -0.4 5,084,975 - -0.3 5,084,975 - +0.1 5,084,978 - +0.1 5,085,008 + +1.0 5,085,080 + -0.1 5,085,080 + -0.3 5,085,081 - +0.3 5,085,094 + +0.5 5,085,094 + -0.2 5,085,094 + -0.3 5,085,094 + +0.5 5,085,094 + +0.7 5,085,094 + +0.3 5,085,094 + +0.7 5,085,094 + +0.7 5,085,094 + -0.6 5,085,094 + +0.4 5,085,095 - +0.3 5,085,095 - +0.5 5,085,095 - +0.1 5,085,209 + AO356_22775 0.32 -1.0 5,085,209 + AO356_22775 0.32 -0.6 5,085,210 - AO356_22775 0.33 -0.7 5,085,210 - AO356_22775 0.33 +0.2 5,085,210 - AO356_22775 0.33 -1.3 5,085,433 + -0.5 5,085,433 + +0.3 5,085,484 - -1.4 5,085,484 - +0.3 5,085,596 + AO356_22780 0.18 -0.2 5,085,596 + AO356_22780 0.18 -2.0 5,085,596 + AO356_22780 0.18 +0.2 5,085,596 + AO356_22780 0.18 +0.4 5,085,597 - AO356_22780 0.18 -0.8 5,085,597 - AO356_22780 0.18 -1.6 5,085,597 - AO356_22780 0.18 -0.2 5,085,597 - AO356_22780 0.18 -0.1 5,085,597 - AO356_22780 0.18 +0.1 5,085,597 - AO356_22780 0.18 -0.1 5,085,597 - AO356_22780 0.18 +0.9 5,085,597 - AO356_22780 0.18 +0.9 5,085,600 + AO356_22780 0.19 +0.3 5,085,600 + AO356_22780 0.19 +0.7 5,085,600 + AO356_22780 0.19 -1.2 5,085,600 + AO356_22780 0.19 +1.0 5,085,601 - AO356_22780 0.20 -0.7 5,085,601 - AO356_22780 0.20 -0.3 5,085,745 + AO356_22780 0.82 -0.7 5,085,793 + -0.7 5,085,802 + +0.1 5,085,803 - +0.1 5,085,817 + +0.3 5,085,817 + +2.3 5,085,817 + +0.9 5,085,817 + -0.2 5,085,818 - +0.4 5,085,818 - +0.4 5,085,821 + -0.7 5,085,821 + +0.2 5,085,822 - +0.1 5,085,822 - -0.0
Or see this region's nucleotide sequence