Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22545 and AO356_22550 are separated by 19 nucleotides AO356_22550 and AO356_22555 are separated by 274 nucleotides
AO356_22545: AO356_22545 - LysR family transcriptional regulator, at 5,038,179 to 5,039,117
_22545
AO356_22550: AO356_22550 - hypothetical protein, at 5,039,137 to 5,039,598
_22550
AO356_22555: AO356_22555 - chloroperoxidase, at 5,039,873 to 5,040,559
_22555
Position (kb)
5039
5040
5041 Strain fitness (log2 ratio)
-2
-1
0
1 at 5038.991 kb on - strand, within AO356_22545 at 5039.115 kb on + strand at 5039.275 kb on + strand, within AO356_22550 at 5039.276 kb on - strand, within AO356_22550 at 5039.309 kb on + strand, within AO356_22550 at 5039.310 kb on - strand, within AO356_22550 at 5039.310 kb on - strand, within AO356_22550 at 5039.310 kb on - strand, within AO356_22550 at 5039.310 kb on - strand, within AO356_22550 at 5039.349 kb on - strand, within AO356_22550 at 5039.378 kb on + strand, within AO356_22550 at 5039.379 kb on - strand, within AO356_22550 at 5039.452 kb on + strand, within AO356_22550 at 5039.493 kb on + strand, within AO356_22550 at 5039.493 kb on + strand, within AO356_22550 at 5039.494 kb on - strand, within AO356_22550 at 5039.494 kb on - strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.495 kb on + strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.496 kb on - strand, within AO356_22550 at 5039.534 kb on + strand, within AO356_22550 at 5039.535 kb on - strand, within AO356_22550 at 5039.535 kb on - strand, within AO356_22550 at 5039.562 kb on - strand at 5039.665 kb on + strand at 5039.665 kb on + strand at 5039.665 kb on + strand at 5039.666 kb on - strand at 5039.860 kb on - strand at 5039.895 kb on + strand at 5039.896 kb on - strand at 5040.061 kb on + strand, within AO356_22555 at 5040.061 kb on + strand, within AO356_22555 at 5040.080 kb on + strand, within AO356_22555 at 5040.081 kb on - strand, within AO356_22555 at 5040.090 kb on + strand, within AO356_22555 at 5040.091 kb on - strand, within AO356_22555 at 5040.201 kb on + strand, within AO356_22555 at 5040.202 kb on - strand, within AO356_22555 at 5040.202 kb on - strand, within AO356_22555 at 5040.202 kb on - strand, within AO356_22555 at 5040.226 kb on + strand, within AO356_22555 at 5040.226 kb on + strand, within AO356_22555 at 5040.226 kb on + strand, within AO356_22555 at 5040.227 kb on - strand, within AO356_22555 at 5040.227 kb on - strand, within AO356_22555 at 5040.227 kb on - strand, within AO356_22555 at 5040.227 kb on - strand, within AO356_22555 at 5040.229 kb on + strand, within AO356_22555 at 5040.229 kb on + strand, within AO356_22555 at 5040.230 kb on - strand, within AO356_22555 at 5040.230 kb on - strand, within AO356_22555 at 5040.275 kb on + strand, within AO356_22555 at 5040.275 kb on + strand, within AO356_22555 at 5040.276 kb on - strand, within AO356_22555 at 5040.276 kb on - strand, within AO356_22555 at 5040.276 kb on - strand, within AO356_22555 at 5040.276 kb on - strand, within AO356_22555 at 5040.276 kb on - strand, within AO356_22555 at 5040.419 kb on + strand, within AO356_22555 at 5040.419 kb on + strand, within AO356_22555 at 5040.420 kb on - strand, within AO356_22555 at 5040.420 kb on - strand, within AO356_22555 at 5040.462 kb on - strand, within AO356_22555 at 5040.462 kb on - strand, within AO356_22555 at 5040.485 kb on + strand, within AO356_22555 at 5040.485 kb on + strand, within AO356_22555 at 5040.485 kb on + strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.486 kb on - strand, within AO356_22555 at 5040.516 kb on + strand at 5040.517 kb on - strand at 5040.577 kb on + strand at 5040.577 kb on + strand at 5040.578 kb on - strand at 5040.578 kb on - strand at 5040.578 kb on - strand at 5040.578 kb on - strand at 5040.632 kb on + strand at 5040.632 kb on + strand at 5040.632 kb on + strand at 5040.632 kb on + strand at 5040.632 kb on + strand at 5040.632 kb on + strand at 5040.633 kb on - strand at 5040.633 kb on - strand at 5040.633 kb on - strand at 5040.649 kb on + strand at 5040.682 kb on - strand at 5040.682 kb on - strand at 5040.682 kb on - strand at 5040.682 kb on - strand at 5040.781 kb on + strand at 5040.782 kb on - strand at 5040.782 kb on - strand at 5040.792 kb on + strand at 5040.792 kb on + strand at 5040.793 kb on - strand at 5040.793 kb on - strand at 5040.874 kb on + strand at 5040.875 kb on - strand at 5040.875 kb on - strand at 5040.875 kb on - strand at 5040.939 kb on + strand at 5040.939 kb on + strand at 5040.939 kb on + strand at 5040.940 kb on - strand at 5040.940 kb on - strand at 5040.940 kb on - strand at 5040.940 kb on - strand at 5040.940 kb on - strand at 5040.991 kb on - strand at 5040.991 kb on - strand at 5041.072 kb on + strand at 5041.072 kb on + strand at 5041.072 kb on + strand at 5041.073 kb on - strand at 5041.073 kb on - strand at 5041.129 kb on - strand at 5041.129 kb on - strand at 5041.134 kb on + strand at 5041.134 kb on + strand at 5041.156 kb on + strand at 5041.157 kb on - strand at 5041.157 kb on - strand at 5041.167 kb on - strand at 5041.250 kb on + strand at 5041.250 kb on + strand at 5041.291 kb on + strand at 5041.345 kb on - strand at 5041.449 kb on + strand at 5041.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 5,038,991 - AO356_22545 0.86 +0.3 5,039,115 + -0.8 5,039,275 + AO356_22550 0.30 +0.7 5,039,276 - AO356_22550 0.30 -0.4 5,039,309 + AO356_22550 0.37 +0.5 5,039,310 - AO356_22550 0.37 +0.3 5,039,310 - AO356_22550 0.37 -0.3 5,039,310 - AO356_22550 0.37 -1.2 5,039,310 - AO356_22550 0.37 +0.1 5,039,349 - AO356_22550 0.46 +0.7 5,039,378 + AO356_22550 0.52 +1.0 5,039,379 - AO356_22550 0.52 -1.4 5,039,452 + AO356_22550 0.68 -0.5 5,039,493 + AO356_22550 0.77 +0.2 5,039,493 + AO356_22550 0.77 -0.3 5,039,494 - AO356_22550 0.77 +0.4 5,039,494 - AO356_22550 0.77 -0.6 5,039,495 + AO356_22550 0.77 +0.9 5,039,495 + AO356_22550 0.77 +0.1 5,039,495 + AO356_22550 0.77 +0.0 5,039,495 + AO356_22550 0.77 -0.1 5,039,495 + AO356_22550 0.77 -0.4 5,039,495 + AO356_22550 0.77 +1.1 5,039,495 + AO356_22550 0.77 -0.3 5,039,495 + AO356_22550 0.77 +0.4 5,039,496 - AO356_22550 0.78 -1.3 5,039,496 - AO356_22550 0.78 -1.2 5,039,496 - AO356_22550 0.78 +0.5 5,039,496 - AO356_22550 0.78 +0.0 5,039,496 - AO356_22550 0.78 +0.6 5,039,496 - AO356_22550 0.78 -0.4 5,039,496 - AO356_22550 0.78 +1.1 5,039,496 - AO356_22550 0.78 +0.2 5,039,496 - AO356_22550 0.78 -0.2 5,039,534 + AO356_22550 0.86 -1.8 5,039,535 - AO356_22550 0.86 -0.4 5,039,535 - AO356_22550 0.86 -0.1 5,039,562 - +0.9 5,039,665 + -0.1 5,039,665 + -0.7 5,039,665 + -0.1 5,039,666 - +0.7 5,039,860 - +0.1 5,039,895 + -0.2 5,039,896 - +0.2 5,040,061 + AO356_22555 0.27 -0.0 5,040,061 + AO356_22555 0.27 -1.0 5,040,080 + AO356_22555 0.30 +0.3 5,040,081 - AO356_22555 0.30 +0.2 5,040,090 + AO356_22555 0.32 +0.5 5,040,091 - AO356_22555 0.32 -0.3 5,040,201 + AO356_22555 0.48 +0.7 5,040,202 - AO356_22555 0.48 +0.6 5,040,202 - AO356_22555 0.48 +0.1 5,040,202 - AO356_22555 0.48 +0.3 5,040,226 + AO356_22555 0.51 -1.3 5,040,226 + AO356_22555 0.51 -0.1 5,040,226 + AO356_22555 0.51 +0.7 5,040,227 - AO356_22555 0.52 -0.9 5,040,227 - AO356_22555 0.52 -0.6 5,040,227 - AO356_22555 0.52 -1.4 5,040,227 - AO356_22555 0.52 -0.3 5,040,229 + AO356_22555 0.52 +0.9 5,040,229 + AO356_22555 0.52 -0.7 5,040,230 - AO356_22555 0.52 +1.2 5,040,230 - AO356_22555 0.52 +0.7 5,040,275 + AO356_22555 0.59 +1.6 5,040,275 + AO356_22555 0.59 -2.0 5,040,276 - AO356_22555 0.59 -0.9 5,040,276 - AO356_22555 0.59 +0.1 5,040,276 - AO356_22555 0.59 +0.4 5,040,276 - AO356_22555 0.59 +0.3 5,040,276 - AO356_22555 0.59 -0.5 5,040,419 + AO356_22555 0.79 -1.4 5,040,419 + AO356_22555 0.79 +0.7 5,040,420 - AO356_22555 0.80 +0.6 5,040,420 - AO356_22555 0.80 +0.3 5,040,462 - AO356_22555 0.86 +0.6 5,040,462 - AO356_22555 0.86 +0.2 5,040,485 + AO356_22555 0.89 -0.1 5,040,485 + AO356_22555 0.89 -0.5 5,040,485 + AO356_22555 0.89 +0.3 5,040,486 - AO356_22555 0.89 -0.8 5,040,486 - AO356_22555 0.89 +0.1 5,040,486 - AO356_22555 0.89 -0.3 5,040,486 - AO356_22555 0.89 -2.3 5,040,486 - AO356_22555 0.89 +0.7 5,040,486 - AO356_22555 0.89 +0.5 5,040,486 - AO356_22555 0.89 -0.5 5,040,516 + +1.0 5,040,517 - -0.1 5,040,577 + +0.5 5,040,577 + +0.9 5,040,578 - -0.1 5,040,578 - +0.6 5,040,578 - -0.4 5,040,578 - +0.7 5,040,632 + +0.6 5,040,632 + +0.6 5,040,632 + -0.1 5,040,632 + +0.2 5,040,632 + +0.6 5,040,632 + +0.7 5,040,633 - +0.3 5,040,633 - +0.7 5,040,633 - +0.8 5,040,649 + +0.1 5,040,682 - -0.4 5,040,682 - -0.7 5,040,682 - +0.9 5,040,682 - +1.0 5,040,781 + +0.7 5,040,782 - +0.1 5,040,782 - -1.4 5,040,792 + +0.2 5,040,792 + -0.7 5,040,793 - +0.1 5,040,793 - +0.3 5,040,874 + -0.6 5,040,875 - +0.5 5,040,875 - +1.7 5,040,875 - +0.3 5,040,939 + +0.1 5,040,939 + -0.3 5,040,939 + +0.9 5,040,940 - +0.1 5,040,940 - +0.3 5,040,940 - +0.4 5,040,940 - +0.4 5,040,940 - -0.5 5,040,991 - -1.0 5,040,991 - +0.6 5,041,072 + +0.9 5,041,072 + +1.0 5,041,072 + -0.5 5,041,073 - -0.1 5,041,073 - -0.4 5,041,129 - -1.1 5,041,129 - +0.5 5,041,134 + -0.7 5,041,134 + +0.1 5,041,156 + +0.3 5,041,157 - +0.1 5,041,157 - +1.1 5,041,167 - -1.1 5,041,250 + +1.1 5,041,250 + +0.2 5,041,291 + +0.2 5,041,345 - +0.8 5,041,449 + +0.1 5,041,463 + +0.1
Or see this region's nucleotide sequence