Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19545

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19540 and AO356_19545 are separated by 34 nucleotidesAO356_19545 and AO356_19550 are separated by 34 nucleotidesAO356_19550 and AO356_19555 are separated by 158 nucleotides AO356_19540: AO356_19540 - chorismate synthase, at 4,382,965 to 4,384,056 _19540 AO356_19545: AO356_19545 - MFS transporter, at 4,384,091 to 4,385,236 _19545 AO356_19550: AO356_19550 - acireductone dioxygenase, at 4,385,271 to 4,385,816 _19550 AO356_19555: AO356_19555 - hypothetical protein, at 4,385,975 to 4,386,253 _19555 Position (kb) 4384 4385 4386Strain fitness (log2 ratio) -1 0 1 2at 4384.127 kb on + strandat 4384.127 kb on + strandat 4384.127 kb on + strandat 4384.128 kb on - strandat 4384.128 kb on - strandat 4384.136 kb on + strandat 4384.178 kb on + strandat 4384.179 kb on - strandat 4384.284 kb on - strand, within AO356_19545at 4384.284 kb on - strand, within AO356_19545at 4384.367 kb on + strand, within AO356_19545at 4384.368 kb on - strand, within AO356_19545at 4384.368 kb on - strand, within AO356_19545at 4384.368 kb on - strand, within AO356_19545at 4384.565 kb on + strand, within AO356_19545at 4384.566 kb on - strand, within AO356_19545at 4384.566 kb on - strand, within AO356_19545at 4384.706 kb on + strand, within AO356_19545at 4384.707 kb on - strand, within AO356_19545at 4384.707 kb on - strand, within AO356_19545at 4384.707 kb on - strand, within AO356_19545at 4384.745 kb on + strand, within AO356_19545at 4384.745 kb on + strand, within AO356_19545at 4384.746 kb on - strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4384.748 kb on + strand, within AO356_19545at 4385.078 kb on + strand, within AO356_19545at 4385.078 kb on + strand, within AO356_19545at 4385.078 kb on + strand, within AO356_19545at 4385.079 kb on - strand, within AO356_19545at 4385.120 kb on + strand, within AO356_19545at 4385.121 kb on - strand, within AO356_19545at 4385.121 kb on - strand, within AO356_19545at 4385.201 kb on - strandat 4385.250 kb on + strandat 4385.290 kb on - strandat 4385.442 kb on + strand, within AO356_19550at 4385.481 kb on + strand, within AO356_19550at 4385.559 kb on + strand, within AO356_19550at 4385.581 kb on + strand, within AO356_19550at 4385.612 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.631 kb on + strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.632 kb on - strand, within AO356_19550at 4385.637 kb on + strand, within AO356_19550at 4385.637 kb on + strand, within AO356_19550at 4385.637 kb on + strand, within AO356_19550at 4385.637 kb on + strand, within AO356_19550at 4385.983 kb on + strandat 4385.984 kb on - strandat 4385.988 kb on + strandat 4385.988 kb on + strandat 4385.988 kb on + strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4385.989 kb on - strandat 4386.120 kb on + strand, within AO356_19555at 4386.121 kb on - strand, within AO356_19555at 4386.211 kb on - strand, within AO356_19555

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,384,127 + +0.2
4,384,127 + +0.2
4,384,127 + -0.8
4,384,128 - +0.6
4,384,128 - +0.8
4,384,136 + -0.1
4,384,178 + +0.2
4,384,179 - +0.5
4,384,284 - AO356_19545 0.17 +0.6
4,384,284 - AO356_19545 0.17 +0.1
4,384,367 + AO356_19545 0.24 +1.8
4,384,368 - AO356_19545 0.24 +0.7
4,384,368 - AO356_19545 0.24 -1.0
4,384,368 - AO356_19545 0.24 +0.8
4,384,565 + AO356_19545 0.41 +0.7
4,384,566 - AO356_19545 0.41 +0.2
4,384,566 - AO356_19545 0.41 +0.0
4,384,706 + AO356_19545 0.54 +0.3
4,384,707 - AO356_19545 0.54 -1.1
4,384,707 - AO356_19545 0.54 -0.3
4,384,707 - AO356_19545 0.54 +1.1
4,384,745 + AO356_19545 0.57 -0.3
4,384,745 + AO356_19545 0.57 +1.0
4,384,746 - AO356_19545 0.57 -0.5
4,384,748 + AO356_19545 0.57 -0.2
4,384,748 + AO356_19545 0.57 +0.3
4,384,748 + AO356_19545 0.57 +0.8
4,384,748 + AO356_19545 0.57 -0.2
4,384,748 + AO356_19545 0.57 -0.5
4,384,748 + AO356_19545 0.57 +0.9
4,384,748 + AO356_19545 0.57 +0.5
4,384,748 + AO356_19545 0.57 +0.0
4,385,078 + AO356_19545 0.86 -0.2
4,385,078 + AO356_19545 0.86 +1.0
4,385,078 + AO356_19545 0.86 +1.1
4,385,079 - AO356_19545 0.86 -0.8
4,385,120 + AO356_19545 0.90 +0.6
4,385,121 - AO356_19545 0.90 +0.1
4,385,121 - AO356_19545 0.90 +1.0
4,385,201 - -0.0
4,385,250 + +0.0
4,385,290 - +0.9
4,385,442 + AO356_19550 0.31 -0.7
4,385,481 + AO356_19550 0.38 +0.4
4,385,559 + AO356_19550 0.53 +0.0
4,385,581 + AO356_19550 0.57 -0.9
4,385,612 + AO356_19550 0.62 +0.9
4,385,631 + AO356_19550 0.66 +1.9
4,385,631 + AO356_19550 0.66 -0.5
4,385,631 + AO356_19550 0.66 -0.2
4,385,631 + AO356_19550 0.66 +0.4
4,385,631 + AO356_19550 0.66 +1.2
4,385,631 + AO356_19550 0.66 +0.5
4,385,631 + AO356_19550 0.66 +1.0
4,385,631 + AO356_19550 0.66 -0.6
4,385,631 + AO356_19550 0.66 +0.2
4,385,632 - AO356_19550 0.66 -0.5
4,385,632 - AO356_19550 0.66 +1.0
4,385,632 - AO356_19550 0.66 +0.6
4,385,632 - AO356_19550 0.66 -0.2
4,385,632 - AO356_19550 0.66 +0.1
4,385,632 - AO356_19550 0.66 -0.2
4,385,632 - AO356_19550 0.66 +0.3
4,385,632 - AO356_19550 0.66 +0.6
4,385,632 - AO356_19550 0.66 +0.0
4,385,632 - AO356_19550 0.66 +1.0
4,385,637 + AO356_19550 0.67 -0.2
4,385,637 + AO356_19550 0.67 +0.1
4,385,637 + AO356_19550 0.67 -0.0
4,385,637 + AO356_19550 0.67 +0.2
4,385,983 + +0.5
4,385,984 - +0.1
4,385,988 + +0.1
4,385,988 + +0.4
4,385,988 + -0.3
4,385,989 - +0.2
4,385,989 - +0.5
4,385,989 - -0.6
4,385,989 - +0.1
4,385,989 - +0.3
4,385,989 - +0.3
4,385,989 - -0.1
4,385,989 - +0.7
4,385,989 - +0.2
4,386,120 + AO356_19555 0.52 +0.3
4,386,121 - AO356_19555 0.52 +0.5
4,386,211 - AO356_19555 0.85 -0.2

Or see this region's nucleotide sequence