Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19090

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19080 and AO356_19085 are separated by 8 nucleotidesAO356_19085 and AO356_19090 overlap by 1 nucleotidesAO356_19090 and AO356_19095 are separated by 120 nucleotidesAO356_19095 and AO356_19100 are separated by 52 nucleotides AO356_19080: AO356_19080 - dehydrogenase, at 4,287,836 to 4,288,549 _19080 AO356_19085: AO356_19085 - phosphoribosylglycinamide formyltransferase, at 4,288,558 to 4,289,208 _19085 AO356_19090: AO356_19090 - phosphoribosylaminoimidazole synthetase, at 4,289,208 to 4,290,266 _19090 AO356_19095: AO356_19095 - hypothetical protein, at 4,290,387 to 4,290,578 _19095 AO356_19100: AO356_19100 - hypothetical protein, at 4,290,631 to 4,291,689 _19100 Position (kb) 4289 4290 4291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4288.296 kb on + strand, within AO356_19080at 4288.297 kb on - strand, within AO356_19080at 4288.297 kb on - strand, within AO356_19080at 4288.464 kb on + strand, within AO356_19080at 4288.464 kb on + strand, within AO356_19080at 4288.465 kb on - strand, within AO356_19080at 4288.465 kb on - strand, within AO356_19080at 4288.549 kb on + strandat 4288.549 kb on + strandat 4288.549 kb on + strandat 4288.550 kb on - strandat 4288.550 kb on - strandat 4288.559 kb on + strandat 4288.560 kb on - strandat 4288.560 kb on - strandat 4288.654 kb on + strand, within AO356_19085at 4288.654 kb on + strand, within AO356_19085at 4288.667 kb on + strand, within AO356_19085at 4288.668 kb on - strand, within AO356_19085at 4288.736 kb on - strand, within AO356_19085at 4288.738 kb on + strand, within AO356_19085at 4288.739 kb on - strand, within AO356_19085at 4288.739 kb on - strand, within AO356_19085at 4288.739 kb on - strand, within AO356_19085at 4288.739 kb on - strand, within AO356_19085at 4288.843 kb on + strand, within AO356_19085at 4288.844 kb on - strand, within AO356_19085at 4288.844 kb on - strand, within AO356_19085at 4288.853 kb on + strand, within AO356_19085at 4288.853 kb on + strand, within AO356_19085at 4288.853 kb on + strand, within AO356_19085at 4288.853 kb on + strand, within AO356_19085at 4288.853 kb on + strand, within AO356_19085at 4288.854 kb on - strand, within AO356_19085at 4288.854 kb on - strand, within AO356_19085at 4288.854 kb on - strand, within AO356_19085at 4289.076 kb on - strand, within AO356_19085at 4289.160 kb on + strandat 4289.161 kb on - strandat 4289.161 kb on - strandat 4289.219 kb on + strandat 4289.581 kb on + strand, within AO356_19090at 4289.821 kb on + strand, within AO356_19090at 4289.821 kb on + strand, within AO356_19090at 4289.822 kb on - strand, within AO356_19090at 4289.822 kb on - strand, within AO356_19090at 4289.944 kb on + strand, within AO356_19090at 4289.944 kb on + strand, within AO356_19090at 4290.332 kb on + strandat 4290.434 kb on + strand, within AO356_19095at 4290.434 kb on + strand, within AO356_19095at 4290.434 kb on + strand, within AO356_19095at 4290.434 kb on + strand, within AO356_19095at 4290.435 kb on - strand, within AO356_19095at 4290.435 kb on - strand, within AO356_19095at 4290.435 kb on - strand, within AO356_19095at 4290.455 kb on - strand, within AO356_19095at 4290.461 kb on + strand, within AO356_19095at 4290.461 kb on + strand, within AO356_19095at 4290.461 kb on + strand, within AO356_19095at 4290.461 kb on + strand, within AO356_19095at 4290.462 kb on - strand, within AO356_19095at 4290.462 kb on - strand, within AO356_19095at 4290.463 kb on + strand, within AO356_19095at 4290.463 kb on + strand, within AO356_19095at 4290.463 kb on + strand, within AO356_19095at 4290.464 kb on - strand, within AO356_19095at 4290.464 kb on - strand, within AO356_19095at 4290.464 kb on - strand, within AO356_19095at 4290.464 kb on - strand, within AO356_19095at 4290.469 kb on + strand, within AO356_19095at 4290.469 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.487 kb on + strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.488 kb on - strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.489 kb on + strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.490 kb on - strand, within AO356_19095at 4290.497 kb on - strand, within AO356_19095at 4290.712 kb on + strandat 4290.712 kb on + strandat 4290.712 kb on + strandat 4290.713 kb on - strandat 4290.783 kb on + strand, within AO356_19100at 4290.783 kb on + strand, within AO356_19100at 4290.877 kb on + strand, within AO356_19100at 4290.877 kb on + strand, within AO356_19100at 4290.878 kb on - strand, within AO356_19100at 4290.933 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.258 kb on - strand, within AO356_19100at 4291.258 kb on - strand, within AO356_19100

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,288,296 + AO356_19080 0.64 +1.0
4,288,297 - AO356_19080 0.65 +0.6
4,288,297 - AO356_19080 0.65 -1.1
4,288,464 + AO356_19080 0.88 +0.8
4,288,464 + AO356_19080 0.88 -0.3
4,288,465 - AO356_19080 0.88 -0.3
4,288,465 - AO356_19080 0.88 +1.4
4,288,549 + +0.6
4,288,549 + +0.3
4,288,549 + +0.1
4,288,550 - +0.4
4,288,550 - +0.9
4,288,559 + +0.9
4,288,560 - +0.3
4,288,560 - +1.8
4,288,654 + AO356_19085 0.15 -2.4
4,288,654 + AO356_19085 0.15 -2.6
4,288,667 + AO356_19085 0.17 -1.3
4,288,668 - AO356_19085 0.17 -2.1
4,288,736 - AO356_19085 0.27 -2.8
4,288,738 + AO356_19085 0.28 -2.2
4,288,739 - AO356_19085 0.28 -2.3
4,288,739 - AO356_19085 0.28 -2.1
4,288,739 - AO356_19085 0.28 -2.0
4,288,739 - AO356_19085 0.28 -2.8
4,288,843 + AO356_19085 0.44 -1.4
4,288,844 - AO356_19085 0.44 -1.7
4,288,844 - AO356_19085 0.44 -2.7
4,288,853 + AO356_19085 0.45 -2.0
4,288,853 + AO356_19085 0.45 -1.1
4,288,853 + AO356_19085 0.45 -3.0
4,288,853 + AO356_19085 0.45 -2.5
4,288,853 + AO356_19085 0.45 -3.3
4,288,854 - AO356_19085 0.45 -2.7
4,288,854 - AO356_19085 0.45 -3.5
4,288,854 - AO356_19085 0.45 -1.8
4,289,076 - AO356_19085 0.80 -1.7
4,289,160 + -2.9
4,289,161 - -3.3
4,289,161 - -2.0
4,289,219 + -4.1
4,289,581 + AO356_19090 0.35 -2.7
4,289,821 + AO356_19090 0.58 -0.7
4,289,821 + AO356_19090 0.58 -1.7
4,289,822 - AO356_19090 0.58 -2.6
4,289,822 - AO356_19090 0.58 -2.7
4,289,944 + AO356_19090 0.69 -2.0
4,289,944 + AO356_19090 0.69 -1.1
4,290,332 + -2.3
4,290,434 + AO356_19095 0.24 -0.1
4,290,434 + AO356_19095 0.24 +0.3
4,290,434 + AO356_19095 0.24 +0.2
4,290,434 + AO356_19095 0.24 +0.1
4,290,435 - AO356_19095 0.25 -0.5
4,290,435 - AO356_19095 0.25 -0.3
4,290,435 - AO356_19095 0.25 -0.2
4,290,455 - AO356_19095 0.35 +1.1
4,290,461 + AO356_19095 0.39 -0.7
4,290,461 + AO356_19095 0.39 +0.0
4,290,461 + AO356_19095 0.39 +0.7
4,290,461 + AO356_19095 0.39 +1.1
4,290,462 - AO356_19095 0.39 -0.4
4,290,462 - AO356_19095 0.39 -0.8
4,290,463 + AO356_19095 0.40 +0.6
4,290,463 + AO356_19095 0.40 +0.1
4,290,463 + AO356_19095 0.40 -0.3
4,290,464 - AO356_19095 0.40 -0.0
4,290,464 - AO356_19095 0.40 -0.9
4,290,464 - AO356_19095 0.40 -0.5
4,290,464 - AO356_19095 0.40 +0.5
4,290,469 + AO356_19095 0.43 +0.1
4,290,469 + AO356_19095 0.43 +0.7
4,290,487 + AO356_19095 0.52 +0.4
4,290,487 + AO356_19095 0.52 -0.0
4,290,487 + AO356_19095 0.52 +0.1
4,290,487 + AO356_19095 0.52 +0.4
4,290,487 + AO356_19095 0.52 +0.1
4,290,487 + AO356_19095 0.52 +0.4
4,290,487 + AO356_19095 0.52 -0.3
4,290,487 + AO356_19095 0.52 +0.5
4,290,488 - AO356_19095 0.53 +0.1
4,290,488 - AO356_19095 0.53 +0.4
4,290,488 - AO356_19095 0.53 +0.5
4,290,488 - AO356_19095 0.53 +0.3
4,290,488 - AO356_19095 0.53 +0.4
4,290,488 - AO356_19095 0.53 +1.4
4,290,488 - AO356_19095 0.53 -0.0
4,290,488 - AO356_19095 0.53 +1.1
4,290,489 + AO356_19095 0.53 -0.1
4,290,489 + AO356_19095 0.53 -1.6
4,290,489 + AO356_19095 0.53 +0.3
4,290,489 + AO356_19095 0.53 -0.4
4,290,489 + AO356_19095 0.53 -0.2
4,290,489 + AO356_19095 0.53 -0.3
4,290,489 + AO356_19095 0.53 +0.1
4,290,489 + AO356_19095 0.53 +0.4
4,290,489 + AO356_19095 0.53 +0.4
4,290,489 + AO356_19095 0.53 +0.1
4,290,489 + AO356_19095 0.53 +0.5
4,290,489 + AO356_19095 0.53 +0.3
4,290,490 - AO356_19095 0.54 +0.4
4,290,490 - AO356_19095 0.54 +1.1
4,290,490 - AO356_19095 0.54 +0.2
4,290,490 - AO356_19095 0.54 -0.8
4,290,490 - AO356_19095 0.54 -0.0
4,290,490 - AO356_19095 0.54 -0.3
4,290,490 - AO356_19095 0.54 +0.3
4,290,497 - AO356_19095 0.57 -1.8
4,290,712 + -1.5
4,290,712 + +0.5
4,290,712 + -2.1
4,290,713 - +0.4
4,290,783 + AO356_19100 0.14 +0.7
4,290,783 + AO356_19100 0.14 +0.1
4,290,877 + AO356_19100 0.23 +0.8
4,290,877 + AO356_19100 0.23 -0.6
4,290,878 - AO356_19100 0.23 +0.3
4,290,933 + AO356_19100 0.29 -0.2
4,291,257 + AO356_19100 0.59 +1.4
4,291,257 + AO356_19100 0.59 +1.2
4,291,257 + AO356_19100 0.59 -0.8
4,291,257 + AO356_19100 0.59 -0.3
4,291,257 + AO356_19100 0.59 +0.1
4,291,258 - AO356_19100 0.59 -0.0
4,291,258 - AO356_19100 0.59 +0.4

Or see this region's nucleotide sequence