Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12040

Experiment: L-Isoleucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_12035 and AO356_12040 overlap by 4 nucleotidesAO356_12040 and AO356_12045 are separated by 113 nucleotides AO356_12035: AO356_12035 - amino acid ABC transporter permease, at 2,730,993 to 2,731,826 _12035 AO356_12040: AO356_12040 - amino acid ABC transporter substrate-binding protein, at 2,731,823 to 2,732,644 _12040 AO356_12045: AO356_12045 - homocysteine methyltransferase, at 2,732,758 to 2,733,657 _12045 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2730.829 kb on + strandat 2730.829 kb on + strandat 2730.829 kb on + strandat 2730.829 kb on + strandat 2730.830 kb on - strandat 2730.830 kb on - strandat 2730.830 kb on - strandat 2730.843 kb on + strandat 2730.843 kb on + strandat 2730.843 kb on + strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.844 kb on - strandat 2730.910 kb on + strandat 2730.910 kb on + strandat 2730.910 kb on + strandat 2730.910 kb on + strandat 2730.910 kb on + strandat 2730.910 kb on + strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2730.911 kb on - strandat 2731.010 kb on - strandat 2731.021 kb on + strandat 2731.021 kb on + strandat 2731.075 kb on + strandat 2731.075 kb on + strandat 2731.075 kb on + strandat 2731.075 kb on + strandat 2731.075 kb on + strandat 2731.076 kb on - strandat 2731.108 kb on + strand, within AO356_12035at 2731.108 kb on + strand, within AO356_12035at 2731.108 kb on + strand, within AO356_12035at 2731.108 kb on + strand, within AO356_12035at 2731.108 kb on + strand, within AO356_12035at 2731.108 kb on + strand, within AO356_12035at 2731.109 kb on - strand, within AO356_12035at 2731.109 kb on - strand, within AO356_12035at 2731.109 kb on - strand, within AO356_12035at 2731.109 kb on - strand, within AO356_12035at 2731.109 kb on - strand, within AO356_12035at 2731.109 kb on - strand, within AO356_12035at 2731.115 kb on - strand, within AO356_12035at 2731.129 kb on + strand, within AO356_12035at 2731.129 kb on + strand, within AO356_12035at 2731.129 kb on + strand, within AO356_12035at 2731.129 kb on + strand, within AO356_12035at 2731.129 kb on + strand, within AO356_12035at 2731.130 kb on - strand, within AO356_12035at 2731.130 kb on - strand, within AO356_12035at 2731.130 kb on - strand, within AO356_12035at 2731.130 kb on - strand, within AO356_12035at 2731.357 kb on + strand, within AO356_12035at 2731.366 kb on + strand, within AO356_12035at 2731.366 kb on + strand, within AO356_12035at 2731.366 kb on + strand, within AO356_12035at 2731.366 kb on + strand, within AO356_12035at 2731.367 kb on - strand, within AO356_12035at 2731.367 kb on - strand, within AO356_12035at 2731.439 kb on - strand, within AO356_12035at 2731.489 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.741 kb on + strand, within AO356_12035at 2731.742 kb on - strand, within AO356_12035at 2731.742 kb on - strand, within AO356_12035at 2731.742 kb on - strand, within AO356_12035at 2731.742 kb on - strand, within AO356_12035at 2732.104 kb on - strand, within AO356_12040at 2732.134 kb on - strand, within AO356_12040at 2732.134 kb on - strand, within AO356_12040at 2732.184 kb on + strand, within AO356_12040at 2732.184 kb on + strand, within AO356_12040at 2732.184 kb on + strand, within AO356_12040at 2732.185 kb on - strand, within AO356_12040at 2732.185 kb on - strand, within AO356_12040at 2732.194 kb on - strand, within AO356_12040at 2732.194 kb on - strand, within AO356_12040at 2732.251 kb on + strand, within AO356_12040at 2732.252 kb on - strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.295 kb on + strand, within AO356_12040at 2732.296 kb on - strand, within AO356_12040at 2732.296 kb on - strand, within AO356_12040at 2732.296 kb on - strand, within AO356_12040at 2732.298 kb on + strand, within AO356_12040at 2732.299 kb on - strand, within AO356_12040at 2732.299 kb on - strand, within AO356_12040at 2732.299 kb on - strand, within AO356_12040at 2732.299 kb on - strand, within AO356_12040at 2732.299 kb on - strand, within AO356_12040at 2732.299 kb on - strand, within AO356_12040at 2732.367 kb on + strand, within AO356_12040at 2732.368 kb on - strand, within AO356_12040at 2732.368 kb on - strand, within AO356_12040at 2732.517 kb on + strand, within AO356_12040at 2732.531 kb on + strand, within AO356_12040at 2732.666 kb on + strandat 2732.666 kb on + strandat 2732.673 kb on + strandat 2732.673 kb on + strandat 2732.673 kb on + strandat 2732.673 kb on + strandat 2732.673 kb on + strandat 2732.673 kb on + strandat 2732.673 kb on + strandat 2732.674 kb on - strandat 2732.674 kb on - strandat 2732.880 kb on - strand, within AO356_12045at 2732.899 kb on + strand, within AO356_12045at 2732.900 kb on - strand, within AO356_12045at 2732.900 kb on - strand, within AO356_12045at 2732.938 kb on + strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2732.939 kb on - strand, within AO356_12045at 2733.218 kb on + strand, within AO356_12045at 2733.218 kb on + strand, within AO356_12045at 2733.219 kb on - strand, within AO356_12045at 2733.550 kb on + strand, within AO356_12045at 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.627 kb on + strandat 2733.628 kb on - strandat 2733.628 kb on - strandat 2733.628 kb on - strandat 2733.628 kb on - strandat 2733.628 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
remove
2,730,829 + +0.8
2,730,829 + -3.3
2,730,829 + +0.7
2,730,829 + +0.1
2,730,830 - +0.1
2,730,830 - -0.4
2,730,830 - -1.5
2,730,843 + +2.5
2,730,843 + -0.2
2,730,843 + +0.9
2,730,844 - -0.0
2,730,844 - -0.4
2,730,844 - +1.1
2,730,844 - +0.5
2,730,844 - +0.9
2,730,844 - -0.1
2,730,844 - +1.0
2,730,844 - +1.0
2,730,910 + +0.7
2,730,910 + +0.3
2,730,910 + +0.1
2,730,910 + -1.4
2,730,910 + -0.1
2,730,910 + -0.2
2,730,911 - -0.1
2,730,911 - +0.2
2,730,911 - +1.6
2,730,911 - +1.1
2,730,911 - -1.4
2,730,911 - +0.5
2,730,911 - +0.6
2,730,911 - +0.8
2,730,911 - +1.3
2,730,911 - -0.1
2,730,911 - +0.5
2,731,010 - -0.9
2,731,021 + +0.6
2,731,021 + +0.2
2,731,075 + +0.5
2,731,075 + +0.3
2,731,075 + +0.3
2,731,075 + -0.9
2,731,075 + -0.2
2,731,076 - -0.1
2,731,108 + AO356_12035 0.14 -1.2
2,731,108 + AO356_12035 0.14 -0.2
2,731,108 + AO356_12035 0.14 +0.3
2,731,108 + AO356_12035 0.14 +1.1
2,731,108 + AO356_12035 0.14 +1.1
2,731,108 + AO356_12035 0.14 -0.4
2,731,109 - AO356_12035 0.14 +0.1
2,731,109 - AO356_12035 0.14 -0.4
2,731,109 - AO356_12035 0.14 +0.3
2,731,109 - AO356_12035 0.14 -0.1
2,731,109 - AO356_12035 0.14 -0.1
2,731,109 - AO356_12035 0.14 +0.4
2,731,115 - AO356_12035 0.15 +0.9
2,731,129 + AO356_12035 0.16 -0.4
2,731,129 + AO356_12035 0.16 -0.8
2,731,129 + AO356_12035 0.16 -0.5
2,731,129 + AO356_12035 0.16 +1.6
2,731,129 + AO356_12035 0.16 +0.1
2,731,130 - AO356_12035 0.16 +0.4
2,731,130 - AO356_12035 0.16 +0.7
2,731,130 - AO356_12035 0.16 -0.4
2,731,130 - AO356_12035 0.16 +1.7
2,731,357 + AO356_12035 0.44 -0.0
2,731,366 + AO356_12035 0.45 -0.5
2,731,366 + AO356_12035 0.45 +0.0
2,731,366 + AO356_12035 0.45 -0.3
2,731,366 + AO356_12035 0.45 -0.2
2,731,367 - AO356_12035 0.45 -0.1
2,731,367 - AO356_12035 0.45 -0.2
2,731,439 - AO356_12035 0.53 +0.1
2,731,489 + AO356_12035 0.59 -0.6
2,731,741 + AO356_12035 0.90 -1.5
2,731,741 + AO356_12035 0.90 -0.0
2,731,741 + AO356_12035 0.90 +0.0
2,731,741 + AO356_12035 0.90 +1.0
2,731,741 + AO356_12035 0.90 +0.5
2,731,741 + AO356_12035 0.90 -0.5
2,731,741 + AO356_12035 0.90 -1.3
2,731,742 - AO356_12035 0.90 -0.4
2,731,742 - AO356_12035 0.90 +0.5
2,731,742 - AO356_12035 0.90 +0.5
2,731,742 - AO356_12035 0.90 +0.7
2,732,104 - AO356_12040 0.34 -1.1
2,732,134 - AO356_12040 0.38 +1.2
2,732,134 - AO356_12040 0.38 -0.3
2,732,184 + AO356_12040 0.44 +0.8
2,732,184 + AO356_12040 0.44 +0.4
2,732,184 + AO356_12040 0.44 +0.2
2,732,185 - AO356_12040 0.44 +0.5
2,732,185 - AO356_12040 0.44 +0.6
2,732,194 - AO356_12040 0.45 +0.2
2,732,194 - AO356_12040 0.45 -0.3
2,732,251 + AO356_12040 0.52 +0.9
2,732,252 - AO356_12040 0.52 +0.2
2,732,295 + AO356_12040 0.57 +0.8
2,732,295 + AO356_12040 0.57 -0.3
2,732,295 + AO356_12040 0.57 -0.2
2,732,295 + AO356_12040 0.57 +0.1
2,732,295 + AO356_12040 0.57 -0.3
2,732,295 + AO356_12040 0.57 +0.8
2,732,295 + AO356_12040 0.57 +0.2
2,732,295 + AO356_12040 0.57 -0.4
2,732,296 - AO356_12040 0.58 +0.2
2,732,296 - AO356_12040 0.58 -0.1
2,732,296 - AO356_12040 0.58 +0.7
2,732,298 + AO356_12040 0.58 -0.9
2,732,299 - AO356_12040 0.58 +1.1
2,732,299 - AO356_12040 0.58 -0.1
2,732,299 - AO356_12040 0.58 +0.3
2,732,299 - AO356_12040 0.58 +0.2
2,732,299 - AO356_12040 0.58 +0.9
2,732,299 - AO356_12040 0.58 +0.2
2,732,367 + AO356_12040 0.66 +0.5
2,732,368 - AO356_12040 0.66 +0.6
2,732,368 - AO356_12040 0.66 +0.0
2,732,517 + AO356_12040 0.84 +0.5
2,732,531 + AO356_12040 0.86 +1.9
2,732,666 + +0.0
2,732,666 + -1.3
2,732,673 + -0.1
2,732,673 + -0.1
2,732,673 + +0.2
2,732,673 + +0.4
2,732,673 + +0.2
2,732,673 + -0.1
2,732,673 + +0.2
2,732,674 - -0.9
2,732,674 - +0.3
2,732,880 - AO356_12045 0.14 +0.6
2,732,899 + AO356_12045 0.16 +1.1
2,732,900 - AO356_12045 0.16 -0.2
2,732,900 - AO356_12045 0.16 +0.5
2,732,938 + AO356_12045 0.20 +0.1
2,732,939 - AO356_12045 0.20 -0.4
2,732,939 - AO356_12045 0.20 -1.0
2,732,939 - AO356_12045 0.20 -1.1
2,732,939 - AO356_12045 0.20 +0.8
2,732,939 - AO356_12045 0.20 +1.1
2,732,939 - AO356_12045 0.20 +0.5
2,732,939 - AO356_12045 0.20 +0.5
2,733,218 + AO356_12045 0.51 -0.0
2,733,218 + AO356_12045 0.51 -0.1
2,733,219 - AO356_12045 0.51 +2.0
2,733,550 + AO356_12045 0.88 -0.6
2,733,627 + +0.6
2,733,627 + +0.2
2,733,627 + -0.9
2,733,627 + -0.1
2,733,627 + -0.4
2,733,627 + +0.3
2,733,627 + +0.0
2,733,627 + +0.2
2,733,627 + +0.7
2,733,628 - +0.5
2,733,628 - +0.9
2,733,628 - -1.0
2,733,628 - -0.8
2,733,628 - +0.2

Or see this region's nucleotide sequence