Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04730

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04720 and AO356_04725 are separated by 121 nucleotidesAO356_04725 and AO356_04730 are separated by 28 nucleotidesAO356_04730 and AO356_04735 are separated by 306 nucleotides AO356_04720: AO356_04720 - lysine transporter LysE, at 1,061,213 to 1,061,842 _04720 AO356_04725: AO356_04725 - hypothetical protein, at 1,061,964 to 1,062,323 _04725 AO356_04730: AO356_04730 - hypothetical protein, at 1,062,352 to 1,062,762 _04730 AO356_04735: AO356_04735 - hypothetical protein, at 1,063,069 to 1,066,800 _04735 Position (kb) 1062 1063Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1061.397 kb on + strand, within AO356_04720at 1061.457 kb on + strand, within AO356_04720at 1061.540 kb on + strand, within AO356_04720at 1061.541 kb on - strand, within AO356_04720at 1061.721 kb on + strand, within AO356_04720at 1061.721 kb on + strand, within AO356_04720at 1061.721 kb on + strand, within AO356_04720at 1061.721 kb on + strand, within AO356_04720at 1061.721 kb on + strand, within AO356_04720at 1061.722 kb on - strand, within AO356_04720at 1061.722 kb on - strand, within AO356_04720at 1061.772 kb on + strand, within AO356_04720at 1061.772 kb on + strand, within AO356_04720at 1061.773 kb on - strand, within AO356_04720at 1061.840 kb on + strandat 1061.840 kb on + strandat 1061.854 kb on - strandat 1061.991 kb on + strandat 1061.991 kb on + strandat 1061.991 kb on + strandat 1062.020 kb on + strand, within AO356_04725at 1062.020 kb on + strand, within AO356_04725at 1062.021 kb on - strand, within AO356_04725at 1062.021 kb on - strand, within AO356_04725at 1062.045 kb on + strand, within AO356_04725at 1062.046 kb on - strand, within AO356_04725at 1062.046 kb on - strand, within AO356_04725at 1062.073 kb on + strand, within AO356_04725at 1062.073 kb on + strand, within AO356_04725at 1062.074 kb on - strand, within AO356_04725at 1062.074 kb on - strand, within AO356_04725at 1062.086 kb on + strand, within AO356_04725at 1062.101 kb on - strand, within AO356_04725at 1062.101 kb on - strand, within AO356_04725at 1062.101 kb on - strand, within AO356_04725at 1062.102 kb on + strand, within AO356_04725at 1062.106 kb on - strand, within AO356_04725at 1062.141 kb on - strand, within AO356_04725at 1062.180 kb on + strand, within AO356_04725at 1062.180 kb on + strand, within AO356_04725at 1062.180 kb on + strand, within AO356_04725at 1062.181 kb on - strand, within AO356_04725at 1062.181 kb on - strand, within AO356_04725at 1062.181 kb on - strand, within AO356_04725at 1062.290 kb on + strandat 1062.290 kb on + strandat 1062.291 kb on - strandat 1062.291 kb on - strandat 1062.613 kb on + strand, within AO356_04730at 1062.613 kb on + strand, within AO356_04730at 1062.613 kb on + strand, within AO356_04730at 1062.679 kb on + strand, within AO356_04730at 1062.679 kb on + strand, within AO356_04730at 1062.679 kb on + strand, within AO356_04730at 1062.679 kb on + strand, within AO356_04730at 1062.679 kb on + strand, within AO356_04730at 1062.679 kb on + strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.680 kb on - strand, within AO356_04730at 1062.743 kb on + strandat 1062.743 kb on + strandat 1062.744 kb on - strandat 1062.744 kb on - strandat 1062.744 kb on - strandat 1062.798 kb on + strandat 1062.809 kb on + strandat 1062.809 kb on + strandat 1062.810 kb on - strandat 1062.810 kb on - strandat 1062.810 kb on - strandat 1062.826 kb on + strandat 1062.827 kb on - strandat 1062.894 kb on + strandat 1062.894 kb on + strandat 1062.895 kb on - strandat 1063.038 kb on - strandat 1063.071 kb on - strandat 1063.125 kb on + strandat 1063.125 kb on + strandat 1063.125 kb on + strandat 1063.126 kb on - strandat 1063.166 kb on + strandat 1063.166 kb on + strandat 1063.166 kb on + strandat 1063.167 kb on - strandat 1063.167 kb on - strandat 1063.232 kb on + strandat 1063.232 kb on + strandat 1063.233 kb on - strandat 1063.281 kb on - strandat 1063.281 kb on - strandat 1063.281 kb on - strandat 1063.281 kb on - strandat 1063.333 kb on + strandat 1063.355 kb on + strandat 1063.355 kb on + strandat 1063.355 kb on + strandat 1063.355 kb on + strandat 1063.355 kb on + strandat 1063.356 kb on - strandat 1063.356 kb on - strandat 1063.356 kb on - strandat 1063.356 kb on - strandat 1063.356 kb on - strandat 1063.356 kb on - strandat 1063.359 kb on + strandat 1063.359 kb on + strandat 1063.360 kb on - strandat 1063.360 kb on - strandat 1063.360 kb on - strandat 1063.360 kb on - strandat 1063.402 kb on + strandat 1063.402 kb on + strandat 1063.453 kb on - strand, within AO356_04735at 1063.498 kb on + strand, within AO356_04735at 1063.498 kb on + strand, within AO356_04735at 1063.498 kb on + strand, within AO356_04735at 1063.498 kb on + strand, within AO356_04735at 1063.498 kb on + strand, within AO356_04735at 1063.499 kb on - strand, within AO356_04735at 1063.499 kb on - strand, within AO356_04735at 1063.499 kb on - strand, within AO356_04735at 1063.499 kb on - strand, within AO356_04735at 1063.499 kb on - strand, within AO356_04735at 1063.499 kb on - strand, within AO356_04735at 1063.507 kb on - strand, within AO356_04735at 1063.507 kb on - strand, within AO356_04735at 1063.507 kb on - strand, within AO356_04735at 1063.532 kb on + strand, within AO356_04735at 1063.592 kb on + strand, within AO356_04735at 1063.593 kb on - strand, within AO356_04735at 1063.626 kb on + strand, within AO356_04735at 1063.645 kb on + strand, within AO356_04735at 1063.645 kb on + strand, within AO356_04735at 1063.646 kb on - strand, within AO356_04735at 1063.646 kb on - strand, within AO356_04735at 1063.646 kb on - strand, within AO356_04735at 1063.646 kb on - strand, within AO356_04735at 1063.667 kb on + strand, within AO356_04735at 1063.667 kb on + strand, within AO356_04735at 1063.668 kb on - strand, within AO356_04735at 1063.727 kb on + strand, within AO356_04735at 1063.728 kb on - strand, within AO356_04735at 1063.728 kb on - strand, within AO356_04735at 1063.731 kb on + strand, within AO356_04735at 1063.731 kb on + strand, within AO356_04735at 1063.732 kb on - strand, within AO356_04735at 1063.732 kb on - strand, within AO356_04735at 1063.732 kb on - strand, within AO356_04735at 1063.732 kb on - strand, within AO356_04735

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,061,397 + AO356_04720 0.29 +0.7
1,061,457 + AO356_04720 0.39 -0.1
1,061,540 + AO356_04720 0.52 +0.2
1,061,541 - AO356_04720 0.52 -0.1
1,061,721 + AO356_04720 0.81 -0.6
1,061,721 + AO356_04720 0.81 +0.3
1,061,721 + AO356_04720 0.81 +0.1
1,061,721 + AO356_04720 0.81 +0.3
1,061,721 + AO356_04720 0.81 -0.8
1,061,722 - AO356_04720 0.81 -0.4
1,061,722 - AO356_04720 0.81 -0.8
1,061,772 + AO356_04720 0.89 -0.5
1,061,772 + AO356_04720 0.89 +0.9
1,061,773 - AO356_04720 0.89 +1.8
1,061,840 + +0.5
1,061,840 + +0.6
1,061,854 - -0.0
1,061,991 + +0.3
1,061,991 + +1.2
1,061,991 + -0.9
1,062,020 + AO356_04725 0.16 +0.7
1,062,020 + AO356_04725 0.16 +0.8
1,062,021 - AO356_04725 0.16 +0.2
1,062,021 - AO356_04725 0.16 +1.2
1,062,045 + AO356_04725 0.23 +0.1
1,062,046 - AO356_04725 0.23 +1.1
1,062,046 - AO356_04725 0.23 +0.5
1,062,073 + AO356_04725 0.30 +0.7
1,062,073 + AO356_04725 0.30 +0.1
1,062,074 - AO356_04725 0.31 +0.2
1,062,074 - AO356_04725 0.31 +0.3
1,062,086 + AO356_04725 0.34 +0.6
1,062,101 - AO356_04725 0.38 +1.5
1,062,101 - AO356_04725 0.38 +1.0
1,062,101 - AO356_04725 0.38 -0.9
1,062,102 + AO356_04725 0.38 +1.1
1,062,106 - AO356_04725 0.39 -0.4
1,062,141 - AO356_04725 0.49 +0.3
1,062,180 + AO356_04725 0.60 +1.2
1,062,180 + AO356_04725 0.60 -0.2
1,062,180 + AO356_04725 0.60 +0.8
1,062,181 - AO356_04725 0.60 +1.6
1,062,181 - AO356_04725 0.60 +0.5
1,062,181 - AO356_04725 0.60 +0.5
1,062,290 + +0.2
1,062,290 + -0.1
1,062,291 - -0.2
1,062,291 - -0.0
1,062,613 + AO356_04730 0.64 +0.2
1,062,613 + AO356_04730 0.64 +0.1
1,062,613 + AO356_04730 0.64 +0.8
1,062,679 + AO356_04730 0.80 +0.4
1,062,679 + AO356_04730 0.80 +1.2
1,062,679 + AO356_04730 0.80 +0.0
1,062,679 + AO356_04730 0.80 +0.3
1,062,679 + AO356_04730 0.80 -0.6
1,062,679 + AO356_04730 0.80 -1.5
1,062,680 - AO356_04730 0.80 +0.6
1,062,680 - AO356_04730 0.80 +0.1
1,062,680 - AO356_04730 0.80 +1.5
1,062,680 - AO356_04730 0.80 -1.2
1,062,680 - AO356_04730 0.80 +0.5
1,062,680 - AO356_04730 0.80 -1.1
1,062,680 - AO356_04730 0.80 +1.6
1,062,743 + +1.2
1,062,743 + +0.1
1,062,744 - +1.1
1,062,744 - +0.3
1,062,744 - -0.7
1,062,798 + +0.2
1,062,809 + -1.1
1,062,809 + +0.2
1,062,810 - -1.0
1,062,810 - +0.3
1,062,810 - -0.6
1,062,826 + -0.4
1,062,827 - -0.8
1,062,894 + -0.8
1,062,894 + -0.6
1,062,895 - +0.9
1,063,038 - +0.5
1,063,071 - +0.2
1,063,125 + -0.4
1,063,125 + -0.4
1,063,125 + +0.2
1,063,126 - +0.9
1,063,166 + -0.3
1,063,166 + +0.4
1,063,166 + +0.4
1,063,167 - +0.1
1,063,167 - -0.4
1,063,232 + +0.1
1,063,232 + -0.3
1,063,233 - +0.1
1,063,281 - +0.8
1,063,281 - -2.9
1,063,281 - +0.3
1,063,281 - +0.6
1,063,333 + +0.7
1,063,355 + -0.5
1,063,355 + +0.7
1,063,355 + +1.1
1,063,355 + -0.1
1,063,355 + -0.4
1,063,356 - +0.8
1,063,356 - +0.5
1,063,356 - +0.4
1,063,356 - -0.3
1,063,356 - +0.4
1,063,356 - +0.4
1,063,359 + -0.6
1,063,359 + +0.4
1,063,360 - -0.4
1,063,360 - +0.3
1,063,360 - +0.0
1,063,360 - +0.9
1,063,402 + +0.6
1,063,402 + +0.6
1,063,453 - AO356_04735 0.10 -0.9
1,063,498 + AO356_04735 0.11 +0.5
1,063,498 + AO356_04735 0.11 -0.1
1,063,498 + AO356_04735 0.11 -0.9
1,063,498 + AO356_04735 0.11 +0.6
1,063,498 + AO356_04735 0.11 -0.7
1,063,499 - AO356_04735 0.12 -1.2
1,063,499 - AO356_04735 0.12 +1.6
1,063,499 - AO356_04735 0.12 +0.2
1,063,499 - AO356_04735 0.12 +0.5
1,063,499 - AO356_04735 0.12 -0.0
1,063,499 - AO356_04735 0.12 +0.6
1,063,507 - AO356_04735 0.12 +1.0
1,063,507 - AO356_04735 0.12 +0.8
1,063,507 - AO356_04735 0.12 +0.4
1,063,532 + AO356_04735 0.12 -0.4
1,063,592 + AO356_04735 0.14 +0.1
1,063,593 - AO356_04735 0.14 +0.6
1,063,626 + AO356_04735 0.15 +0.8
1,063,645 + AO356_04735 0.15 +0.5
1,063,645 + AO356_04735 0.15 +1.6
1,063,646 - AO356_04735 0.15 +0.4
1,063,646 - AO356_04735 0.15 +0.1
1,063,646 - AO356_04735 0.15 +0.1
1,063,646 - AO356_04735 0.15 -1.0
1,063,667 + AO356_04735 0.16 -0.1
1,063,667 + AO356_04735 0.16 +0.6
1,063,668 - AO356_04735 0.16 +0.5
1,063,727 + AO356_04735 0.18 +0.8
1,063,728 - AO356_04735 0.18 -0.1
1,063,728 - AO356_04735 0.18 +0.2
1,063,731 + AO356_04735 0.18 -0.7
1,063,731 + AO356_04735 0.18 +1.5
1,063,732 - AO356_04735 0.18 +0.3
1,063,732 - AO356_04735 0.18 +1.1
1,063,732 - AO356_04735 0.18 +1.1
1,063,732 - AO356_04735 0.18 -2.4

Or see this region's nucleotide sequence