Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3394 and Shew_3395 are separated by 42 nucleotides Shew_3395 and Shew_3396 are separated by 169 nucleotides Shew_3396 and Shew_3397 are separated by 155 nucleotides
Shew_3394: Shew_3394 - MscS mechanosensitive ion channel (RefSeq), at 4,042,979 to 4,043,812
_3394
Shew_3395: Shew_3395 - radical SAM domain-containing protein (RefSeq), at 4,043,855 to 4,044,733
_3395
Shew_3396: Shew_3396 - hypothetical protein (RefSeq), at 4,044,903 to 4,045,205
_3396
Shew_3397: Shew_3397 - GCN5-related N-acetyltransferase (RefSeq), at 4,045,361 to 4,045,831
_3397
Position (kb) 4043
4044
4045 Strain fitness (log2 ratio) -1
0
1 at 4043.171 kb on - strand, within Shew_3394 at 4043.418 kb on - strand, within Shew_3394 at 4043.779 kb on - strand at 4044.196 kb on + strand, within Shew_3395 at 4044.350 kb on - strand, within Shew_3395 at 4044.415 kb on + strand, within Shew_3395 at 4044.424 kb on + strand, within Shew_3395 at 4045.269 kb on + strand at 4045.713 kb on + strand, within Shew_3397 at 4045.721 kb on - strand, within Shew_3397
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 4,043,171 - Shew_3394 0.23 +0.5 4,043,418 - Shew_3394 0.53 -0.6 4,043,779 - -0.6 4,044,196 + Shew_3395 0.39 -0.0 4,044,350 - Shew_3395 0.56 -0.1 4,044,415 + Shew_3395 0.64 -0.0 4,044,424 + Shew_3395 0.65 +1.1 4,045,269 + -0.1 4,045,713 + Shew_3397 0.75 +0.0 4,045,721 - Shew_3397 0.76 +0.1
Or see this region's nucleotide sequence