Strain Fitness in Shewanella loihica PV-4 around Shew_2983

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2982 and Shew_2983 are separated by 37 nucleotidesShew_2983 and Shew_2984 are separated by 205 nucleotides Shew_2982: Shew_2982 - glucose-methanol-choline oxidoreductase (RefSeq), at 3,537,658 to 3,539,376 _2982 Shew_2983: Shew_2983 - Tat pathway signal sequence domain-containing protein (RefSeq), at 3,539,414 to 3,540,067 _2983 Shew_2984: Shew_2984 - ferredoxin-dependent glutamate synthase (RefSeq), at 3,540,273 to 3,541,823 _2984 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -1 0 1at 3538.597 kb on - strand, within Shew_2982at 3538.597 kb on - strand, within Shew_2982at 3538.740 kb on + strand, within Shew_2982at 3538.748 kb on - strand, within Shew_2982at 3538.806 kb on - strand, within Shew_2982at 3539.288 kb on - strandat 3539.614 kb on + strand, within Shew_2983at 3539.744 kb on - strand, within Shew_2983at 3539.939 kb on + strand, within Shew_2983at 3540.511 kb on + strand, within Shew_2984at 3540.641 kb on + strand, within Shew_2984at 3540.691 kb on + strand, within Shew_2984at 3540.872 kb on + strand, within Shew_2984at 3540.887 kb on + strand, within Shew_2984

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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3,538,597 - Shew_2982 0.55 -0.0
3,538,597 - Shew_2982 0.55 +0.0
3,538,740 + Shew_2982 0.63 -0.2
3,538,748 - Shew_2982 0.63 -0.2
3,538,806 - Shew_2982 0.67 +0.1
3,539,288 - -0.2
3,539,614 + Shew_2983 0.31 +0.2
3,539,744 - Shew_2983 0.50 +0.2
3,539,939 + Shew_2983 0.80 +0.4
3,540,511 + Shew_2984 0.15 +0.3
3,540,641 + Shew_2984 0.24 +0.1
3,540,691 + Shew_2984 0.27 -0.0
3,540,872 + Shew_2984 0.39 +0.5
3,540,887 + Shew_2984 0.40 -0.5

Or see this region's nucleotide sequence