Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_R0090 and Shew_2636 are separated by 104 nucleotides Shew_2636 and Shew_2637 are separated by 81 nucleotides Shew_2637 and dapD are separated by 35 nucleotides
Shew_R0090: Shew_R0090 - no description, at 3,110,419 to 3,110,571
_R0090
Shew_2636: Shew_2636 - methionine aminopeptidase (RefSeq), at 3,110,676 to 3,111,473
_2636
Shew_2637: Shew_2637 - PII uridylyl-transferase (RefSeq), at 3,111,555 to 3,114,128
_2637
Shew_2638: dapD - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq), at 3,114,164 to 3,114,988
dapD
Position (kb)
3111
3112
3113
3114
3115 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3111.504 kb on + strand at 3111.525 kb on + strand at 3111.783 kb on + strand at 3112.140 kb on - strand, within Shew_2637 at 3112.644 kb on - strand, within Shew_2637 at 3112.651 kb on + strand, within Shew_2637 at 3113.164 kb on + strand, within Shew_2637 at 3113.283 kb on - strand, within Shew_2637 at 3113.384 kb on - strand, within Shew_2637 at 3113.597 kb on + strand, within Shew_2637
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 3,111,504 + +0.2 3,111,525 + -0.2 3,111,783 + -2.3 3,112,140 - Shew_2637 0.23 -3.3 3,112,644 - Shew_2637 0.42 -1.7 3,112,651 + Shew_2637 0.43 -1.6 3,113,164 + Shew_2637 0.63 -0.2 3,113,283 - Shew_2637 0.67 -0.9 3,113,384 - Shew_2637 0.71 -2.4 3,113,597 + Shew_2637 0.79 -2.4
Or see this region's nucleotide sequence