Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2462 and Shew_2463 are separated by 9 nucleotides Shew_2463 and Shew_2464 are separated by 167 nucleotides
Shew_2462: Shew_2462 - MORN repeat-containing protein (RefSeq), at 2,896,062 to 2,897,870
_2462
Shew_2463: Shew_2463 - hypothetical protein (RefSeq), at 2,897,880 to 2,900,201
_2463
Shew_2464: Shew_2464 - hypothetical protein (RefSeq), at 2,900,369 to 2,901,133
_2464
Position (kb)
2897
2898
2899
2900
2901 Strain fitness (log2 ratio)
-1
0
1 at 2896.913 kb on + strand, within Shew_2462 at 2897.010 kb on - strand, within Shew_2462 at 2897.218 kb on + strand, within Shew_2462 at 2897.440 kb on + strand, within Shew_2462 at 2897.515 kb on + strand, within Shew_2462 at 2897.654 kb on - strand, within Shew_2462 at 2897.992 kb on + strand at 2898.167 kb on + strand, within Shew_2463 at 2898.167 kb on + strand, within Shew_2463 at 2898.365 kb on - strand, within Shew_2463 at 2898.948 kb on - strand, within Shew_2463 at 2898.948 kb on - strand, within Shew_2463 at 2899.048 kb on - strand, within Shew_2463 at 2899.540 kb on + strand, within Shew_2463 at 2899.609 kb on - strand, within Shew_2463 at 2899.869 kb on - strand, within Shew_2463 at 2900.147 kb on + strand at 2900.417 kb on + strand at 2900.471 kb on + strand, within Shew_2464 at 2900.614 kb on + strand, within Shew_2464 at 2901.015 kb on - strand, within Shew_2464 at 2901.095 kb on + strand at 2901.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 2,896,913 + Shew_2462 0.47 +0.2 2,897,010 - Shew_2462 0.52 -0.1 2,897,218 + Shew_2462 0.64 -0.1 2,897,440 + Shew_2462 0.76 -0.5 2,897,515 + Shew_2462 0.80 +0.3 2,897,654 - Shew_2462 0.88 -0.5 2,897,992 + -0.8 2,898,167 + Shew_2463 0.12 +1.2 2,898,167 + Shew_2463 0.12 +0.7 2,898,365 - Shew_2463 0.21 +0.3 2,898,948 - Shew_2463 0.46 +0.0 2,898,948 - Shew_2463 0.46 +0.6 2,899,048 - Shew_2463 0.50 -0.2 2,899,540 + Shew_2463 0.71 +0.2 2,899,609 - Shew_2463 0.74 +0.4 2,899,869 - Shew_2463 0.86 -0.1 2,900,147 + +0.1 2,900,417 + -0.0 2,900,471 + Shew_2464 0.13 +0.0 2,900,614 + Shew_2464 0.32 +0.2 2,901,015 - Shew_2464 0.84 +0.1 2,901,095 + +0.2 2,901,149 - -0.1
Or see this region's nucleotide sequence