Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2140 and Shew_2141 are separated by 281 nucleotides Shew_2141 and Shew_2142 are separated by 255 nucleotides Shew_2142 and Shew_2143 are separated by 57 nucleotides
Shew_2140: Shew_2140 - hypothetical protein (RefSeq), at 2,486,164 to 2,487,036
_2140
Shew_2141: Shew_2141 - lytic murein transglycosylase (RefSeq), at 2,487,318 to 2,488,505
_2141
Shew_2142: Shew_2142 - hypothetical protein (RefSeq), at 2,488,761 to 2,489,135
_2142
Shew_2143: Shew_2143 - hypothetical protein (RefSeq), at 2,489,193 to 2,489,876
_2143
Position (kb) 2487
2488
2489 Strain fitness (log2 ratio) -2
-1
0
1 at 2486.641 kb on - strand, within Shew_2140 at 2486.837 kb on + strand, within Shew_2140 at 2487.891 kb on - strand, within Shew_2141 at 2488.239 kb on - strand, within Shew_2141 at 2488.347 kb on - strand, within Shew_2141 at 2488.489 kb on - strand at 2488.753 kb on - strand at 2488.860 kb on + strand, within Shew_2142 at 2489.364 kb on + strand, within Shew_2143
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 2,486,641 - Shew_2140 0.55 +0.1 2,486,837 + Shew_2140 0.77 +0.1 2,487,891 - Shew_2141 0.48 -0.5 2,488,239 - Shew_2141 0.78 -0.9 2,488,347 - Shew_2141 0.87 -0.5 2,488,489 - -1.8 2,488,753 - -0.5 2,488,860 + Shew_2142 0.26 +0.1 2,489,364 + Shew_2143 0.25 +0.6
Or see this region's nucleotide sequence