Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1770 and Shew_1771 are separated by 11 nucleotides Shew_1771 and Shew_1772 are separated by 10 nucleotides Shew_1772 and Shew_1773 are separated by 100 nucleotides
Shew_1770: Shew_1770 - nitrate reductase (RefSeq), at 2,024,219 to 2,026,714
_1770
Shew_1771: Shew_1771 - nitrate reductase cytochrome c-type subunit (NapB) (RefSeq), at 2,026,726 to 2,027,205
_1771
Shew_1772: Shew_1772 - NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome (RefSeq), at 2,027,216 to 2,027,803
_1772
Shew_1773: Shew_1773 - LysR family transcriptional regulator (RefSeq), at 2,027,904 to 2,028,824
_1773
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-1
0
1 at 2026.100 kb on + strand, within Shew_1770 at 2026.165 kb on + strand, within Shew_1770 at 2026.649 kb on - strand at 2026.783 kb on + strand, within Shew_1771 at 2026.783 kb on + strand, within Shew_1771 at 2027.029 kb on + strand, within Shew_1771 at 2027.150 kb on + strand, within Shew_1771 at 2027.157 kb on - strand, within Shew_1771 at 2027.246 kb on + strand at 2027.902 kb on + strand at 2027.910 kb on - strand at 2027.969 kb on + strand at 2028.088 kb on - strand, within Shew_1773
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 2,026,100 + Shew_1770 0.75 +0.3 2,026,165 + Shew_1770 0.78 +0.2 2,026,649 - +0.0 2,026,783 + Shew_1771 0.12 -0.1 2,026,783 + Shew_1771 0.12 +0.1 2,027,029 + Shew_1771 0.63 +0.3 2,027,150 + Shew_1771 0.88 +0.4 2,027,157 - Shew_1771 0.90 +0.9 2,027,246 + -0.2 2,027,902 + +0.0 2,027,910 - +0.2 2,027,969 + +0.0 2,028,088 - Shew_1773 0.20 -0.5
Or see this region's nucleotide sequence