Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1006 and Shew_1007 are separated by 297 nucleotides Shew_1007 and Shew_1008 are separated by 209 nucleotides Shew_1008 and Shew_1009 are separated by 187 nucleotides
Shew_1006: Shew_1006 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,163,002 to 1,163,943
_1006
Shew_1007: Shew_1007 - major outer membrane lipoprotein, putative (RefSeq), at 1,164,241 to 1,164,507
_1007
Shew_1008: Shew_1008 - metal dependent phosphohydrolase (RefSeq), at 1,164,717 to 1,165,958
_1008
Shew_1009: Shew_1009 - peptidoglycan binding domain-containing protein (RefSeq), at 1,166,146 to 1,167,909
_1009
Position (kb) 1164
1165
1166 Strain fitness (log2 ratio) -1
0
1 at 1163.982 kb on - strand at 1164.079 kb on - strand at 1164.440 kb on - strand, within Shew_1007 at 1166.461 kb on - strand, within Shew_1009 at 1166.524 kb on - strand, within Shew_1009 at 1166.578 kb on - strand, within Shew_1009 at 1166.597 kb on - strand, within Shew_1009 at 1166.715 kb on + strand, within Shew_1009 at 1166.733 kb on - strand, within Shew_1009 at 1166.766 kb on - strand, within Shew_1009
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 1,163,982 - +0.3 1,164,079 - -0.0 1,164,440 - Shew_1007 0.75 -1.5 1,166,461 - Shew_1009 0.18 -1.0 1,166,524 - Shew_1009 0.21 -0.4 1,166,578 - Shew_1009 0.24 -0.4 1,166,597 - Shew_1009 0.26 -0.9 1,166,715 + Shew_1009 0.32 -0.9 1,166,733 - Shew_1009 0.33 -0.5 1,166,766 - Shew_1009 0.35 -0.8
Or see this region's nucleotide sequence